Gene detail

Detailed information of XP_020606507.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1708:431644...435182
NR annotation: XP_020606507.1, probable E3 ubiquitin-protein ligase RNF217 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020750848.1

GCCAATTTCATAAAGTCAAAgattcaatttaaatgtcataaaattcataaaatCTTCCACTTTCAACCCTGGGGAGTCTTGAAAGGGAAATTGTGAAGCAAACAACAGTCAGGGAATATCCCTGGCTGATGATGTGCACTTCATCATGTGCCGACGGTTTATCAGCGGTATCGCTTACACCATCAAAACAACTTGTATTGAAAAGGTCTTGTTTGTAAGTGAGAGCAAGGCTTATTTTCTCTGATATCACAGCCTTTTTCGGTGTTCAAAGTCTTGGCTTGTACTATTAACACTCCTTGCCGGCTGCGGATTTCATTCGGTCAGAAATCAGTGATCAATTCGATGTGGATCGTTTTACGTGGTTGCTAAAAATACCTCTGAAATCACGTGTAAATACAAAAGGGAACCTCTACAAAAACCGTCGACTTGGCGAATTTCCTTGAGAGCAGTTAGAAGACGTTAGCCTCCAGAACTCTGTACAAGATGACTATTCCTTGCATGGTTTGCTTTATGGAAACGTCCGAAATAAGTATTCGTTCGTGGTGTTGTTCGGGAATAATTTGCCTGTCTTGTTTGGAAGCTCACGTCTCGTCGAAAATAGAAGAAGCCGTGGTGAAAATCGTGTGTCCTCTCGGCAACTGTGACAGTTTAATTAGCGAGGACGAGATAAAAGAACTTGTGTCAGatgatgtttttgaaaaataCCAGCGCTTCAAAGTGGAAATTGAACAGAATCCACATATCAAGACTTGCCCTGGCTGTTCGCGAATTTATCACCATCCCGACTTAGCGAAGACCGAACAGGAGAGAGATTTAAGTCCGGAAGTTATGAAAGTAACATGCTCAAAATGTCGATTAGTTTGGTGTTTCTCTTGCCAAGCACCCTGGCATCATGGTTTGACGTGTAAAGAGTTCTGTAAAGGAGATAAATCGTTGAAGATATGGGCCAAAAACCGCGGTCAGCCTGTCCGGAACGCATGTCGTTgcccaaaatgtcaagttttCATTCAGAAGTCCAGCGGCTGTGACCACATGTCTTGTAGCAGGTGTCACACAGAATTCTGCTACAGATGTGGAGGGAAGTATCATCACTTAAAATTTGTAGGAAACCATTACGATCGTTTCAGCATCCTGGGCTGTAAATACAATTACAAACCTGATCAGCCTGTGCAGCGTATTGCGGTGCGTGGAGCACTTTTTGGTGGACAAGTGATGGTTGTGCCTATTATAGCCGGGTTAGCCGTCACCGCAGGATGTGCTGTGCTTAGTGCGGGAATAGTTGCCGCTCCATTCTATGCATCTTATGTACTTATCAGGAAACAGAGAGCGAAGCGCAAGCGGGCaaatatcaaaaagaaaaagtaaataatttcaGTGTTTCTTATTGGTGACTGGGGGAACTACTAAAACATGTGCCTTCAAACCAAGGGATAGTCTCCAAACAGTCATTATAAAGGTGGTTGTTATTAGGGTGATGACCCTAATATCGGCTGCAGATGAGACTAACCAAAAAGAAAGATCAAAGGTGAAGGGTAATTTGTACCATATTTTCACAAgctttcaaaaatatatatttaaagcTATCCAGTTTAAcaggttttgttttctaaatgagGGTTTTTTTATCCAAAATGGAAGTTCCCTTTTAGGATtaagggtgcttaccatttggtAGAATAAACTGGTTAAGATGACCATCAAATAATTGGTAAGggattttccaaaatcagcaaaccaactgAGGGAGATGGCACTAATTACCATTTACAATTTGATTTCctgtaattgttttcggctgtcAAGAGACTGGAAGGTTTAGCAAATGGAAAAATACTGCtacatttgactttcaaccaacattttccagattttttggctaaatggtaagcaccagAAATTTCTCTCTGGTTCCCTGTTCAGGTGAATATTATTTAACATTGTTAATAAAGAGGATACAGATTCTACATGTATGTCGcggcagggcaggaaaaaattttgaaatccagtgGGCCAgtgcatttcagttttcagttgccccgACTAAAATATTACTAGCCCCATAGGTTCACAATGTGATGTACTAGGTATTGTCTGTAATCTGACAGTGATAGACTataacaagactactgaggctaatttcacttgcccatcgGACCACCAAACATCccttttcacttgcccaagagcacaattTACTTGCCCTGAGCAATATCAGACCTGGGTTTTTCCCTGCCCTGGCCTGGTGTATTTATTCTGGCAACTTCATGCAGACCAATCAAAAGTTGAGAGAAATACTGgcagaaagaaggaaagaataCACTCCTTCCCTTTATGCTATGTCTCTGTATTAAATTTTCACATCTGTCAGAGATTTTTTCAAACTACCAACTGTTGTATAAAATACATATCATAGTTGGGTACATTGAGAACAGTGCATGTATAATGCATTAATATTTTAGTGTACTTGACAAAGTTTTAAGTATTGGTTTAAAGCAGAGGCTGAAA

Protein

Uniprot

Gene family

Uniprot term	Description
Q4KLT0	E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis OX=8355 GN=rnf217 PE=2 SV=1
D3YYI7	E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 PE=1 SV=2
Q8TC41	E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE=1 SV=4

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031127	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR047552	Domain	E3 ubiquitin-protein ligase RNF217, Rcat domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR047551	Domain	E3 ubiquitin-protein ligase RNF217, BRcat domain	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan