Gene detail

Detailed information of XP_020606657.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1751:105303...107574
NR annotation: XP_020606657.1, trace amine-associated receptor 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020750998.1

TCATCAGACTTACCACCTATTTGTCCACTTGGATCCCAAAAAATCTGTGTGGCAAAATGCTTTATCTGTACCTCTGCATATTTTTCTTGAATCGTTTTATTCCCTTTTGAATGTGGTTTAAATTCAAGTAAGAAAGAGAACTTAGTGAGACTGAACATCcatcataaaacaaaacagtgttgaaaactaaattttgacgTCACTCGCCATTCAGGAGAGTGACTGTAAACTTGCCGGTGCATGGAAGACTAACGTTTTTTTCCTTccgaagaaacaaataaatgctGCAACAATAACATCAACGGAGACAATGCAGATTTATTTCCTAGCAAGCAAAATCCTTGTTCCTCTCGTGTGCCATCTGCAGTTCTCAGGCACTAACAAATCCCGACTCAAATAGAGACCAAGACATCGCTTCATAAACATTCAACCGTTGTGTAAATTCACTGCGAGGGAGCCGCATTTTATTGTGTCTGATTTCGAAACtctgagttttgttttattagcTTGGCAAATTAGTCGGGCATCACGAAAGATAagcaaaatggaaaattaaaagaatatttattaatattaagcttaaataatttcCTAAAGATGAAAATCATACTAACCAAACGGCGAGTGATCAATGATTTGCACTCGCTCAGCGCTTTCAAACTCGCATGGGCGAGCGGGCGAGCGCTAATTCCTAACACTGTCACAAGCTTATATTAGAGATAATTATACTGGCTTTCGTCATAGGATTGACTGAAGGAATCGGCAGACAAGCGTAAAAAAGCTGAATGGCTGAAGATATGTGATCAACAAACGTGGTTGGTTATTTAACGACCCTGAATACAATTGAGAGACATTCTTCATGTACAGCATGGACCTGAAAAGCAACGAAACAACCACAAATTGTTCCAGCTCAACGTTTTATTGCAGGTACGCACCGAACATATCAGGGGAAATCGGAGGCTCAGCCAGTTTTTACATGATTATAGGCCTCACAACAGTCATGATTTCATTCCCTACCATTATTTTGAACGCATTGATAATCTTAGCGATAAATCAAAGGAAAGAGCTGCAAAAACCctcaaacattttgttgtcaaGCATGGCCTTTACGGATCTTCTAGTTGGCGTTATAGTTATGCCGACATTTGCCATCATCGATTTCTTTAAATTAAGTCAAGTTTCCCTTGAGCTTACCTGTATGTTATATTCGGTGCATCGTTTCTCCCTTAATTTACTCTTCAATGTTACTTTGCATCACTTGACTATCATTGCTTGGGAGAGGTACGTGGCGATACAAAAATGGATGGACTACAAGCTTATCCTCACAAATGACCGCCTCAAAAAGATTGCGATAGGTACCTGGCTCTCAGCGATCTTCCCAGCGACTGCAAACTTTATAACGACAGCGGTCGTTGTGGATCCTAGGATTTTGAACGGCTTTTTAACCGGGTGGACTGCTGTGGAAActgtttgtctttttcttgttgCATTCTTTTATCGAAAGGTTTACCTTGGAATACGCAATCGGAAGCTAAACAACATCTCTCAAATCGACGTCCTAATAAAACGAAAACTGGAATCTAAAGTTGCCAAGACGACTGGTTTATTAACCGCTGCGTTTATATCCTCGTTTATCCCCGTGTTTGTTTTTGGTATCCTAGGAAATGCTGTGCCACTCTTTCGTTCGAATGCTGCTAGCCTGTTTACACAGATACTCATGCAGTTGAACTCTCTTTTTAATCCCCTGCTTTACTGTTATAGAGACCGCCGTTTTAGGAACGCTGTTCGAGAGCTGTTGGGGTTGAAAAAGCCTCAAGCAATACAGTCAGCAGTTGGTGCCGCTCAATCTTTCAGGCGAAAGGGTCCATTTAGGTCATCAGAGCTGCACATAGTAGGAAAACGTACGCAACGCTTGACAAGATCAGTATCTTGCAGTCTAACTGATACTTTATATTCTATTCATGGAACACCCAGTGTGGTTATGTTGAAAAAGTCTTTGTCTGCTCCCACGCTTGATACATGCAGCAGCTCCTTAGATGGCTAAGATCCGGAGCGGCCTTCATTCATCCTTCATCATTAATATTCTAAGATCGAAATTCTCTTATTCCAGTAAGACTCCATGAGATTCGTTAACTGCTTACTGTCATGGAGCGGCTGGAAGACCAGAAACAGTGAGAGCAAACATCTCGGCTCCATACGTAGCACCTTTGAACAGCGACTCGATTTGAGACAGGATTTTGTAACTGCAAGGAGCAATCTATATGTAGACGGA

Protein

Uniprot

Uniprot term	Description
P28564	5-hydroxytryptamine receptor 1B OS=Rattus norvegicus OX=10116 GN=Htr1b PE=2 SV=1
P28334	5-hydroxytryptamine receptor 1B OS=Mus musculus OX=10090 GN=Htr1b PE=2 SV=1
Q95254	Growth hormone secretagogue receptor type 1 OS=Sus scrofa OX=9823 GN=GHSR PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR050569	Family	Trace Amine-Associated Receptor	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24249	HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04150	HRH2; histamine receptor H2	-	G protein-coupled receptors	ko04030	deepkoala