Gene detail

Detailed information of XP_020607594.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1833:45051...53542
NR annotation: XP_020607594.1, rab GDP dissociation inhibitor alpha-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020751935.1

ACTATCTTATATGAGCCAAACTATATGCTTTTCAGCGGTCACGCGCTCAATTTGTGAGCCTCTAAACTTCTAAACCGAGCTATGATTGGCTACTAGTTTCATCGCCCAATAGAAATTGGTGTAAGAACCGAAGAAAATTTGTCAACAACTTCATTTTAGCCGGTGGAACACCCATTCATTCTATGTCTTAGACAGAATATCGCATTGATTTCTTTCCCTTTTGGTCAATTCCACAGGTATTATCATGGATAAAGAATACGATTATGTTATCCTCGGTACTGGACTGAAAGAATGTATTCTGAGCGGCGTTTTGTCGGTTGGCGGCAAAAAAGTTCTCCACATGGATCGGAACGATTTCTATGGAGGTGAGAGCACTTCGATGCACCCGCTTGAAAAGCTCTACGAAAAATTCAACGAAACTAAAGAACCGGACGACTCGTTTGGTAATGGCCGTGACTGGAACATTGATTTAGTTCCCAAGTTTTTGATGGCGGATGGAGCGCTTGTCAAGTTGCTAGTCCATACTGGTGTAACACGGTACATGCAGTTCAAACAGATCGAGGGAAGCTTTGTCTATCGCGGAGGCTCCATATACAAAGTTCCTGCCGACGAAAAGGAAGCCTTGACGTCTAGTCTGATGGGAATTTTTGAGAAGCGACGTTTTCGAGCATTCCTATTGTTTGTGCTCAAGTACAGCTGCGACGATCCAACGACATGGGAGGACATCAACCCGAAGACATCCACTATGAAAGATGTGTACACGAAGTTCGGCCTTGATAAGAACACGCAGGATTTCACAGGACACGCCATCGCTTTGTACTTGGATGATGAGTATATGACACAGCCTTGCGAGAAGCCTTTACGACGTATAAAACTCTATTATGATTCCTTATCTCGCTACGGTAAATGCCCCTATTTGTATCCTCTGTATGGCCTCGGTGAGTTGCCTCAGGGATTTGCCAGATTGTCAGCCGTGTACGGAGGGATCTACATGCTGAACAAACCCACAGATGAAATCCTCATGGAAAACGGTGCAGTTTGTGGAGTGAAATCGGAAGGAGAGATTGCCAAAACAAAGGCTGTCATCGCTGACCCGTCGTATTTTCCCGAGAGGGTGAAAAAAATTGGTCAAGTCGTTCGATGTATATGCATTCTTTCCCACCCGATTCCAAATACTAGTGACTCCAAATCCTGCCAGCTGATTATCCCTCAAAATCAAGTCAACCGAAAGTCGGATATCTACGTGTGTTGCATGTCGCACACCAATGCTGTCACCGTCAAAGGCAGATACCTGGCTATTGTCAGCACTACAGTGGAGACAGATGATCCTGAGGCAGAGCTGGGACCTGGGTTGCAGCTGCTTGGCAAGATTGACAAAAAGTTTGTGTGGGTCAGTGAGCAGTTTGAACCACAGGATGATGGCAAAGAGAGCAATATATTCATTTCCAAGTCGTATGACGCCACCACACATTTTGAGACAGTCTGTGAGGACATCATGAGCATGTATGAGAGGATCACAGGAGAAAAGTTTGACCTAAGTGCAATATCTCTTGCAGAGGTAGATGTTGAAGAATCGtaacataaaatacaaataattattgataattgTAGCTTATAAATGATTAAATGTAACAATTGTAAGTACTGGGATTATTTGCAGTAAGCATGTTTATAAACCCATGCACACAGACAACACTTACTTAGAATTCAAAAGTGATTGCCCAAATTTAAGTAATGAACATTTGTAAAGCACTGTTTCCCAATTATTTTGTTGATTCACTGCTGAAGTTGGAAAGAATTACAGCTTGGTATGTTGAGGGTTAGTCAACCATTTAAAAATAGTCTTATATAAAAATGCTTCTTTGTGatctttacattttattatttaataatattagTACTAACGAATGTCAATGCCAGGCAAAGCAGTGATTAACCATTGTTGTAACTAGTCTAAATGCTAATTAAATAGAGCAgtcttcaattgagtgtcaaaagtaatcagatAATTACtttcattggttttggttttactagaGTTTGAGATTCACTGTGTAGTCAACTGGTAAGTAACTGGTGTGGTTTTACTTTTatgacacttaattgaaaaccactcatGTTAAGTTGAGTTGGTTGCAGGAGTAGTTCAAATGACTCAACATCACAATTCAGATAAAGTTCTCCAAGCTGTATTGAACACAACAGGGATACAAGTGCACAACACGAACAACTAACTCCAGTGTAACCTAGCCTCCAAAGCATGTGGacttaacaaataatttatgcTAGGTCACAAGACCTATCGTTTCAATACACAATGAATTGTGCAGCATTTCTTCCATGTTAAGCTAAGCAGCAGTAGGCCCTTTGCCTGACTGCATCACCTGACCGTGTCAATCATAAAAAATGGTTGTAATGCGAAATATATGcaccagaaatggaaagaacatgATGAAATTAGTAAGATTTCCAATTTTGAGGTTACTGACAGGCAAGATTTTAGAACAGTTTTAGTttgacaattttaaacaaaaaataatttgagtatgtttgatggcaAAGCTCACCATCCagcaatgtttttatttacaagtctacatgtaacttgtgaatttttttagacCTTTAGTCTGTTAGATAGCCATAACATCTTCCACTTGAACGTCAGTGGCCTTGAAATTGGAGATCTTTAGTTACTTAATTCATCACGCATTTTCTATCCCTGGTATCTATTTGAACTACCACACCCATTTTTTATATGATTGACAAGATCATGTGACATGGTCATGCGAAGAGCATTTACACAGTGCTTATTGTGTAGTCACGAATGTTCTTGGGTGTGCTTGATTCTAATCAGGGCAGCTGAACTACCTGGTGTCAAATTTCAATAGAATTCTCAATTTAAAACCTCTTCCAAAACAAGTGTCTGAAGATTGCCAATAATTCCTGCTGTTGCAGTCTATTATGATGCAAGATGATACAGTCTATTATCAGATTTATTTCAAGGGGAAACGATGTTATTATTAGCTTGACTGTACCAACAGGCTAGAATTTCTTTGAGGAACATGGCTGTGTTCCAAAAGCACCCAGTTGCCACAGACAGCTAactttgggcaactggaaaaagttacttttttcaCATTAAGCTTTTTAATTATAAAGTGCTGGGCACTCAGAATTTCATGGTTGGGAACTTTTGAGTacctcataatttttcttagatcaCAGCCTTGGGAATATCTTGAAaagtaaatgataatttaatatTACATATTGGTGAACTGCACTTAAAAAAATCCCatttaaaaggaaattatataattattttatctagtttaaaatgttttgtca

Protein

Uniprot

Uniprot term	Description
Q7YQM0	Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus OX=9600 GN=GDI1 PE=2 SV=1
P31150	Rab GDP dissociation inhibitor alpha OS=Homo sapiens OX=9606 GN=GDI1 PE=1 SV=2
Q8HXX7	Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis OX=9541 GN=GDI1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00996	GDI	GDP dissociation inhibitor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018203	Family	GDP dissociation inhibitor	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR000806	Family	Rab GDI protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11787	RAB GDP-DISSOCIATION INHIBITOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005092	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005093	Molecular Function	Rab GDP-dissociation inhibitor activity	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17255	GDI1_2; Rab GDP dissociation inhibitor	-	Exosome	ko04147	deepkoala