Gene detail

Detailed information of XP_020607903.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1862:177706...193979
NR annotation: XP_020607903.1, uncharacterized protein LOC110046550 isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020752244.1

TTAAAATTATGGCGTTGTGTAAGGTTGAAGTTTTCACCAGTTGACACTTTGAACAAGGGAACTCTCCAAACGTTATCTTTGGCGAAGATTTTAGTTCCGAATATCAACTTACAAAGTTGCTAACGAGTAAACTATTTGTTAACCATTGTGTCTGCTGCTTCAATGACATCATTAGTTCATGGTACTACGATGACGTCATGCACCCACTTTACACGTTAACTTGTCTTATATGGAAAGATACAACAGACTGTCCACTAGTCTTCTCTCGACGACCTCCAATTCATCAGGATAGCGATCAAAAATCCTTGTCAGTTTGTCTCCCTCAGCACACAGAACATCGGATAATCGTGGTCATGGCTCGGACAAAGGTTTTAGTTATTGTGCTAATTTTGGCCTTGACAGAAAACTACACAGATTGTTCGACGCATATGACTATGGAGGAAGTGGCGGAATTACATTTCTGCGAAGAAAAGGCGACATATCAGGATACCACTCTTGCCAAGTTCGTGAAACGTTGTTCTCCAAAAGCCTGGCGAGACTTTTTTACGCACAAAAGAGTTTCAGAAGCTATTGAAAGAGCAGATGATGCAATAAGATACGCAAAGAAAGAGATTGATGCAATTCAAGCAAAACAACCAAAATTACTCAGGTACAGGTATCACATAGAACCACCAATGCAACTCATGCTTGAGGCCTTCAATAGGGTCAGTCCAGAGAACATCAAAGTGGTTATTTTGGGTCAGGATCCTACTCCACAAGAAGGAAAAGCTACAGGCAGGGCTTTTAGTGTTGAAGACCCGCGCACAGTTGGGTCAGTAATGAACGTATTGCTAGAGGTAGCCCTAGAGGGATGGAGTGTAGATCTATCAAACGGCGATCTGAGTAAGTGGGAGAATCAAGGTGTTCTGCTGTTGAATTCGGCATTGACGATTGGAGAAATTGAATATATAGATGAAAATGATAAtggtaaaattaaaagaaaacaggtATCTCATTTAGGTTATTGGTGTGAATTTACAAAGTTGCTCATAAGATACATTAGCTATGACCTTGCCGAACCATCTGTTTGGATTCTCTGGGGAAACGTTGCCCAAGATTTCACTGTTGACAGAGTGTTTGACACGTTCAGTAAATGTTATAACCCCACTCAGGCCAGTACGACTGACATAACAAAGGAACAAAGCCTTATCAGTAGACCCAAAAACTACGTCCTGATGGGAGGCCACCCCTCACCCTTGAGTAGTGCTGGCGGAATGAATACATTCTTTGCTGGCCATTACTTTCATTGCGTCAACCTATTTCTTTATGAAAAGAGGCATGGTGCCTACATAAAGTGGGGACTGGTCGATGGTCATAGTGAAAAACTTAACGTAGGTAGCCTTTTTTATCCATGTCCAGAATTTCATTAATCATCATGGCTATAGAATCTGCTGTCGTAACTTCTATGGGTTGACATTCAATTCTTGAGTGACATGCATGACTGGTGATTTATGAAAACGTATTTAATGAAAAGACACAATGCTTATTTGCCTCATGCGAAGCATCCAGTTGAGCAATATGATCATACTAAATATCAAATGCACGCGCACGTCATATTTGAACTGTTTTCAAAGCAATTCcgttgaggaaaaaaaaaaatgaacacgtTATCTACCGGCAGTTTTTCCTAATACGGACCTCCCGGCCGGCAAATAACGTATATTTACGAGTAATGTTGCATTTCTTAGTTTCGACATTTAAACACCTCGCCCTTTCAGGGTACGTGAATATTAAAATCGATAAACTTTACACATAAGAGAGTGTCTGGTTATCCATCTATCGATCTCAGTAAAATTCCTTTTGAATAACAACTGCGGTTAAGGCTGACATCAGCTTTGAACCGGAAAGTTGTTCCATAGTCAATTATGTGTGTTAATCAAGCTCTATAAACGTGCACGCcgaggcatttttttttttagaaacagaACTGACAAGTGTGAAAATCGTAGGCGTACGAGCTGGAGGAGGC

Protein

Uniprot

Uniprot term	Description
Q5L9D9	Uracil-DNA glycosylase 2 OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=ung2 PE=3 SV=1
Q64PM3	Uracil-DNA glycosylase 2 OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=ung2 PE=3 SV=1
Q9CIX2	Uracil-DNA glycosylase OS=Lactococcus lactis subsp. lactis (strain IL1403) OX=272623 GN=ung PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03167	UDG	Uracil DNA glycosylase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005122	Domain	Uracil-DNA glycosylase-like	Interproscan
IPR036895	Homologous_superfamily	Uracil-DNA glycosylase-like domain superfamily	Interproscan
IPR002043	Family	Uracil-DNA glycosylase family 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11264	URACIL-DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004844	Molecular Function	uracil DNA N-glycosylase activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0097510	Biological Process	base-excision repair, AP site formation via deaminated base removal	Interproscan