Gene detail

Detailed information of XP_020607916.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1873:12...59613
NR annotation: XP_020607916.1, TNF receptor-associated factor 4-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020752257.1

CGCTGGTTCATTTGAGGAGTATATCAACGATCAAATCAAACGATCCATACAacaatcttgaattttttcttgatcCAACAACcttgaattttttcttcaacGATCGAACAAGATCTAATTACACTCTAATTGTACTTAGGTTTTCTCTACAATTCTTACATAAAACAGtgcttttcctttgaaattttttcccgTTACTCGGTTTAATTTTTCGTTACTTCGTTACTTGTTACTTCGTTACACCGGTGGCTATTTAAAGTTataacgtcagtttttttaataaagCGTTTGCGATTGGTCTGATGCTGACAGATTGAAACTGCATTTTCTTGTACTTTTAAATCAACTCTCTCTAGCTTTTTAATTCCTTCTGTCCGAAGTGGGGCTCCGTGATTGTGATCATAAATGAGAGCAGAGACGGACACAAAGACAAGGAAGACATATACTGGGGATAACACAAGAAACACCTAGGTCTTGTCCGTGAATACACTTCAGTGGTGATCTCAAGCATCGAGCAGCACCGACAGATGTGAAAAGAGAAACGAAACATTAAGTTACCTTAGTCAAAAGTGATACCAGACGACAGAGTCAGTGGAAACAGACTTGTGCAGTTGGAGATTCAACGGACAAAGTTTTATGACCTTTTGACTTCGGTGCCAGTTCCACGCTTCTACAGAAATAAATAGAAGGAAAGGAAGAGCGACTTAAGAATGCCAGGATATCGTTTAGCAAGTTTGGACAAGAAAACCATTGATGACAAGTACTTTTGCAGCTCCTGTGAGCTGCTGTTAAGAGAGGCCATGCAGACAAGCTGTGGACATTTTTATTGCCAGTCCTGTTTAGCAAATCTCATTCAAGATCAAGTAACTGTTGTGATGATCTGTCTAAAGGATGGAAAGAGTCTTCGTCCAAACGAGGTTTTTGCAGACAAGTTTATGCGTCGTGAAATACTTGCCATTGTCGTTCACTGTACCTTTAAGGATGATGGGTGTATCTGGAAAGGAGAAGTGAGACATTTGGAGAATCACACCAACAGTTGCGAGTTCCTGAAAATACCTTGCGTGCATCCTGAGTGTGGCGTCCTGGTGAAAAAAGCTGATCTAACTCGTCACTTGGAAAGTGAATGCTTGTATCGACTGGAGAAGTGCGACCTTTGCCAGAGAAAAATAGTGTTATCGAGGATGAAGAATCACACCAACAGTTGCGAGTTCCTGAAAATACCTTGCGTGCATCCTGAGTGTGGCGTCCTGGTGAAAAAAGCTGATCTAACTCGTCACTTGGAAAGTGAATGCTTGTATCGACTGGAGAAGTGCGACCTTTGCCAGAGAAAAATAGTGTTATCGAGGATGAAGCAACATCAAGAAACAGAATGCCCAGCATATCCAGTTGCGTGTGATAAATGTAGTAAAGAGGGCATTCATCGTGGAAAGCTGGCAGATCACCAGAACCCTATTTTGGGCGACTGTGAAGGAGTGCAGGGTCCCTGTCCATTTTCACAAATTGGCTGCTACAAAGTGGAGATTCTCAgccaaaaggaaaagaaagagcaTCTGGAACAAGCCAATGCCCACCACAACGTTCTACTCCTACAATTTGCGCTTCGATTGGGGAAAGAATTTGAAACAGTGTTGACACGCGATCCAAGGGTAATGTCCAGAAGTCCTCAGCTCTTGACAAATTACGACAGTGTGATTGCCGATATTCTCGCTCAAGTTCAAACCCAAGCAGGTGAAACCGGGAATCTACGTGAAAAATGTCGAGAGCACAGCGAAAGAATCACCGCCTTGGAAAGAAAAGTGGCTTCAGGGAATGTGCCAGTGTTCAGGGCTGATCGTTGCTTGTGGAGACGCAGTAGCTTAGTTACCGGTGCAAAAAAGCCGTTATCTAGcaatgtgttgtgtttttgggcgaAATCACTTAACTCCCTGTTGCCACTCTCCTCCCAAGAGTATATGGGTTTCAGAAAACCTGACAAAAACGCTAGATTAGGGACCAATGATGAACAGAATGTTACAAAAAGGCAAGATAATTGTCTAGTTGTACTTTATTGCGATCGATCCACCAGTCGGGAAAGCTAG

Protein

Uniprot

Uniprot term	Description
Q13114	TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2
Q60803	TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2
Q6IWL4	TNF receptor-associated factor 6 OS=Danio rerio OX=7955 GN=traf6 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0009898	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan