Gene detail

Detailed information of XP_020608556.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1919:541377...543374
NR annotation: XP_020608556.1, tetratricopeptide repeat protein 28-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020752897.1

attCACATTTACCAGGTGTGTACGTTAGAGAAGGCAGGAAAACTCGCTGATATGATAAAAACGATAGGAGAAAACAAGCAACAGCTTAGAATTGCTAAAGAACTGGGGGATAGGGCTGAAGAAGGAGCTGTTTATTGCAATCTTGGCAATGCTTACAAGAGTCTGGGTGATACTAAACAAGCCATTGAGTACCACAACCAACATCTTAGGATTGCCAAAGAGCTGGGAGACAGGACTGGAGAGGGAGCAGCATATGGTAATCTCGGCTATGATTACAAGAATCTGGGTGATCTTAAACAAGCCATTGACTACCACAGCCTACATCTTGGCATTGCCAAAGAACTGGGACAAAGACATGGAAAACTGGCTGCTTATCGCAATCTTGGCAATGCTTACGAGAGTCTGGGTGATTTTAAACAAGCCATTGAGTACCACAACCATCATCTTAGTGTTGCAATGGAACTGGGGGATTTGGCTGAAGAGGGAGCTGcttatggcaatcttggcaGTGCCTACCAGAAGCTGAGTGATTTCAAACGAGCCACTAAGTACCACAATCAACATCTTAGCATTGCCAAAGACCTAGGAGACAGGGCTGAGGAGGGAGCTGCCTACTGCAATTTAGGCAATGCATACCATCGTCTGGGTGATTTTCAACGAGCCATGCAGTCTCATAAGCAACATCTTAGCCTTGCTACAGAACTGGGGGACACGACTGGAGAAGGCGTTGCTTATGGCAATCGTGGTATTGTTTATCAAAGTCTGGGTGATTTTAGACAAGCCATTGATTATCACGAGACAGATCTTAACATTTGCAAAGAAGTAGAAGACAGGCCTCGAGAGAGAGCTGCTTATGCTAATCTTGGTAATGCTTACCAGGGTCTAGCAGATTTTAAACAAGCCATTGAGTACCACAGTCAGGATCTTAACATTACCAAAGAACTGGGACGGAGTGATACAGAAGGACGTGCTTATTGTAATATTGGTAATGCCCACCAGGGTCTAGGTGATTTTAAACAGGCCATTGAATACCACAACCAACATCTTACCATTGCGAAAGAACTGGGGCAGACGTTTGGAAAAGGAGCTGCTTATGGTAATATTGGCAACGCTTACCAGAGTATGGGTGATTTTAGACAAGCCATTGAGTACCAGCACCGACACCTAAGCATTGCCAAGGAACTGGGGGACAGAGTTGCAGAGGGTACGGTATATTGCAATCTCGGCATTGCTTACCGGAAGCTGGGTGATTTTAAACAAGCTATTGAGTACCACAACCAACATCTTAGCATTGCCAAAGAACTAGgggacagggctggagaaggacgTGCTTTTGGCAATCTTGGTGTTGTATACAAGAGACTGGGTGATTTTCAAGAATCCATTAAATACCAAAACCAACATCTTAGCATTGCGAAAGAACTGGGGCAGAGAGATGCAGAAGGACGTACTTATGATAACCTTGGTAATGCTTACCAACGTCTGGGTGATTTTGCAAGAGCTATTGAGTACCACAACCAAGGTCTTAACATTGCTAAAGAACTGGGACAGAGAGATGGAGAAGGACATGCTTATGcaaatcttggcaacgcttaccAGGGTCTGGGTGATTTTCAACGAGCCATTGAATACCACGACAAGCATCTTAGCATTGCCAAAGAACTGGGGCAGAGAGATGAAGAAGGAAGTGCATGTTATTCCCTAGGATATGACTTTGAACTCTCGGGTGCTTTGCTCGAAGCTCTTAATTACTATCGATCCAGTGTAAAACTTTACGATGAAGTGAGAGCTCTTCTTCAGTCTGAAGATGTGTGGAAAATATCCTTTCGTAATGCGTGTCAAGATGCCTACGCGGCACTTTGGAGAACACTCGTAAGGCTTCAAAAGACTGATGAGGCTTTGCTTGTTGCTGAGCGAGGACGAGCACAAGCCTTCACAGATCTTATAAAATTACAGTATTCAACTTCTGAGGCATTTTAACCTAAAGTATCAATCTCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052386	Family	G-protein-signaling modulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954	LD33695P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15837	GPSM2; G-protein signaling modulator 2	-	Cilium and associated proteins	ko03037	deepkoala