Gene detail

Detailed information of XP_020608663.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1931:233418...241187
NR annotation: XP_020608661.1, uncharacterized protein DDB_G0292642-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020753004.1

ccgtcaaaaatgaaaatcgctTCTTCGATTAAACAACCGGCTTTGTCCTCCGGTTCTGACCGGTTCGTGTGTTCTTTGTTATCGGGAACTGATCGGAATCGGGATCATTCTGTTTTCTGCGAGCTTCCATAAACCTTGTAAGTTACCTATTATTTACGATGGAACCGGATGAAATCCAGATATTCATCAAGGGCATAGAGGGACGGTCGACCACCATAGAGATTCATAAGGATGCCACGGTTGGCAGGGTATTTGAGTTGCTGTCAAAAAAGACTAAGATACCAGTGGAAGGGAGTCGTTTGCTTTATGGCGTCAAGGAATTGCAGAGCGATAAATGCCTGTCATACTATGGCATTGAGAAACATTCCACACTGTTTCTTGTTTTCCGATTGCGTGGCGGATCAGAGCAGACCCGGGTGAAAGTACTGGATCACACAGTGGAGCTCAGCGATGCCCCGGATATGATCACGTGGGATGACGATCCCGAAAACAAACGGGTCAAGATGCCTTGCGGGCACGCTATAActCCAGACTCTCTGACCTTGTATTGTCGAAACATCTTGAACGAAGGCAAATGGCGATTTTTCTGTCCACACATTAGCCAGGACCAGCCACCCAAACATTGTAATACAGAATGGGATTACTTAGATGTTCGACGCCTGGCCGTTTTAACAGATGAAGAAAAAGAGGAGTTTGAAGATAAGATCGCCACGAATCACTTGTTCAAGGCTATGGGCATTCAAGAATGTCCAAAATGCAAGTCAATGGTGGAGCGAAACGACAAAAAAGATTTGCAGTTGCGTTGCACTGTATGCAGTAAGAATGATGGAAAAACATACGAGTTCTGCTGGCACTGCTTGAAGGAGTGGTACAATCGAGACAGCAGGACTCAGTGTGGAAACGCTGACTGTTCCGGTGAAGACAAACGTCTCAAGACTCTACGTGAGTGCCCCACTAAGAAAATTGGTGGAGTTGAGGGATGCCCCATCTACCGAGCATGCGTATTTTGCGGCTCGCTGATTGAGCACACGGAAGCTTGTAAGCACATGCACTGCAGATGCGGCAAGGATTTCTGCTTTGTCTGCTTGAAGCCTAGGGACAGCAGTGGTTGGAAGTGTGGAGGGTCCAGTGATTCCTGCCCTGTGGCACCTGTGCAGACCATGATTCCTGGAGTCTAAGAGAGTCCAAAAACAATCCTGTACCCACTGCCTTAATTGCCTTCAACGCGCGTTTGAACTTGGGTAGCCGTACGTGAGAAGAGAAtgccaatttttaaaagtaacaagGTTGAAACCTAAATAATCCTGTGTAAGTGCTAATCTTGCGAACGCTGACTGTATATTTCTGGGAATTAGGCTAATAACTATCAATTAACAGTATCTTTTATGTTTTTCACTTGCACACTGAAGGGATGATTGAGAAAACAAGATAAACtaggggaaattttttttcctagacGCGGTATTTTTGAGTCATTTAATTGTTAGCAGTTGATCAATTatgattgtaattttttttttgtcgggtGGCGTAGGTTAGATGCATGTTTAATATTAAGCTTAACTTTAAAGTCTTCAAAAGAAgatgttttgtatttgttttgtttatcccgagaattaattataattatctgGCAGACGAATGTAAATAAATGCCATTCTATCCGGGAAGTAGTCCACTGTTTAGCCGAGCGATTTTCCGTCAACTTTCTTCTTAGGGCCTTCTCTACGCTCTGCGAAAGTTGCAGACTAGGCtccggttgttcgaaggctggataacactaACCACCGGATAAACTGCTATCCAGTGCATAAGTGTTAACGAAACAAACTATGCTATCCACTGgaaagtgatttatccggtggatagccaggatagcgttatccacctttcaaacaacttGGGCCAGACTGAAGGTCACTTATGACCTTAACTTTATAAACAGCGCTGCCTTCTGAGCCACCATGAATCAGGAACTCCGGTATTGAACAGCTGTTAATAAAAGTACTAGCCTGAGTATCAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UBL\|NEDD8
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR019956	Domain	Ubiquitin domain	Interproscan
IPR050158	Family	Ubiquitin and ubiquitin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10666	UBIQUITIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0019941	Biological Process	modification-dependent protein catabolic process	Interproscan
GO:0031386	Molecular Function	protein tag activity	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan