Gene detail

Detailed information of XP_020608943.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1951:897223...899500
NR annotation: XP_020608943.1, probable RNA-dependent RNA polymerase 1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110047536

ATGGGATTCCCTTTCTTTGTTTCTTTACCGGATGACGTCAGACCCCCAGAGCATCAAAACCAAGACGAATCGCCGCTGTACATAAAGTACGTGGAAGTAACCGATACGAAACCGTGCTATGCTTCGTATAAGAAAGTCGAAAATTCCTTGTTACTTCGTTACTTGGTCAACAGCCGTGGTACCAAAGTTCTGGAGCAACTGCTGATGGTCAAATTTAAGTCGAAAGACAATGACTTCATTGTAGAAACTTTAAAGAAGGGGATCGAGTGCAACGGATCACAGTATCACTACCTCGGACAATCAAACTCCCAGCTAAGAGACAAAACGTGCTTTATGATGAACGCTTCGCTGAGCGAAATGCACAGTTTGCTAGCAAAGTTTGAAAACTTCGACGAGATTCGTCCAGTCGCTAGACGATCCCAAAAGGTTGCGCTACTCTTTTCGCCTTTCCAACGCAGTTTGAAACTGAAATCCGGCGAATATGACGTCATCGATGACGTAACAAGCACATTGGGAACTTATGTCTTCACAGATGGGTGTGGTCTAATGTCACCTGAGCTCGCGAAGGAAGTGCAGAGTTTGTACAATTTATCGTACGAGCCCAGTGTCATTGAAGTGCGATTCAAAGGTTTCAGTGGCATCTTAGTGTGTTGTAACGAAATGCCAAGGCTTCGACTCAAGGCGCTGTTTAGAAACTCGATGTCGAACTTTGCATCTTCTAGCGAAGCCTTGATTGACATGGACACGCTTGGTATCGTAGACTACTCGCGGACCTACTCGCTGGGTTATTTGGACACACAGACAGTTATGCTGTTGGCCGAAGGAGGTGCCTCGCGCGAGTATCTAGAGACACTTCAGAACAACTACTACGAAGTACTAGATCGGTTGGAAGACAAGACGTACGCTGGTTACTTCTTGCGAACAACAGGGAATGAAGACTTCCTACAGGAGTTCCAGCGCGACGGAATGACTGACGAAGTTACAGGAAAATTGCAACGATTGAAGACTAAGGAGATACAAAACATGAAAAGGGGAAAAATAATTGACGAAAACCAAGGAAATGACGAAGAGGGAGATAGTGAAGTCGACACGAAATTTCAACGTAATCTCAAAACGATGGACGCGAACGCAGATCGCAATTCTACCACAAAAGATGTTTACTTAAGCCAAAACATGACTCGCGCTTTCGATATCAGAGTTTTAACACCAGATGCACGAGTGGTCTATGGAGCCAGCGATCCGTACGACCAGCTGAACTATGGAGAATGTTTCTTCCAGCCAACGCTTCATAAAGCGGAGTGCAATGCATTCTCTTTCGCCGAGTTCGTGCTGGTGATGCGAAGACCATCGTACCACGCGGGAGATGTTCGTGTTTTAAGACTAACTCACAAGAATGAAGCTTACAAAGATCTGCACGATTGTATCGTGTTTCCTAACCGGGGAACGCGTCCACACGCCAACGAATGTGCCGGGGGTCGGGTAGGTGGAGACAAGTATTTCGTGTGCTGGGATAAAAGTCTTCTGCCACGTTATATTAGCAGTCCATATATCGGTTACATATCGAGTTCTTCATCAAAGATCGCCAGCAAAGTGAAAGAAGTTTCTAAGAGTCTTACGTGCATGGAGAAAAAGCCTGCAACTCACTTGGAAAAGAGGAAAAAGCAGCAACAATCACACCAAGCGCTGATGGAGTATTTTGGTCATTTCAAGGATTACGACAACTTACGCTCGCGCGGAACAGAGCTCTTCATCAAGTATGCCTCCCTTTTCGGTTCGACTTGTACCGAATGTGAGCAGCTCAAGGAAATGTTTCTGAGAGAGTTCGACTGGAGTGAGCGATACGATCAAGTTGACAAGAAACTGGGAGAGCTCGAGCAAGCTTGCGAAAAAGAAATTAATGGACCCACCAAATTTTCTCACCAAGGGCAGCTCCATTCTCCATTACGCCCTCCCGGCTTGTGGAATCGTGTTTTAATCTCGCTGCAGTGGAAGAAGCCGCCATTTTGTCCAGGTGATGACGTCTGGAACAAGATGAAAGCTACAAGCGTTACCTTTGTCGAATCACAGATGAATTCAACAGTCGATGTAAAAGCATGA

Transcript

rna-XM_020753284.1

ACGAATAATTAAAATCTCGAccaataaacaaattttattcattttcagttataaaaacagCAGGTTCGGTTAGGGTTGATTTTTATCAACAACTGCAATGTTGTTAAATTATTCGTAACATTTTATAAATGTATTGCAGATACCATCAAAAGCAGCCACAAAAATGGGATtccctttctttgtttctttaccGGATGACGTCAGACCCCCAGAGCATCAAAACCAAGACGAATCGCCGCTGTACATAAAGTACGTGGAAGTAACCGATACGAAACCGTGCTATGCTTCGTATAAGAAAGTCGAAAATTCCTTGTTACTTCGTTACTTGGTCAACAGCCGTGGTACCAAAGTTCTGGAGCAACTGCTGATGGTCAAATTTAAGTCGAAAGACAATGACTTCATTGTAGAAACTTTAAAGAAGGGGATCGAGTGCAACGGATCACAGTATCACTACCTCGGACAATCAAACTCCCAGCTAAGAGACAAAACGTGCTTTATGATGAACGCTTCGCTGAGCGAAATGCACAGTTTGCTagcaaagtttgaaaacttcGACGAGATTCGTCCAGTCGCTAGACGATCCCAAAAGGTTGCGCTACTCTTTTCGCCTTTCCAACGCAGTTTGAAACTGAAATCCGGCGAATATGACGTCATCGATGACGTAACAAGCACATTGGGAACTTATGTCTTCACAGATGGGTGTGGTCTAATGTCACCTGAGCTCGCGAAGGAAGTGCAGAGTTTGTACAATTTATCGTACGAGCCCAGTGTCATTGAAGTGCGATTCAAAGGTTTCAGTGGCATCTTAGTGTGTTGTAACGAAATGCCAAGGCTTCGACTCAAGGCGCTGTTTAGAAACTCGATGTCGAACTTTGCATCTTCTAGCGAAGCCTTGATTGACATGGACACGCTTGGTATCGTAGACTACTCGCGGACCTACTCGCTGGGTTATTTGGACACACAGACAGTTATGCTGTTGGCCGAAGGAGGTGCCTCGCGCGAGTATCTAGAGACACTTCAGAACAACTACTACGAAGTACTAGATCGGTTGGAAGACAAGACGTACGCTGGTTACTTCTTGCGAACAACAGGGAATGAAGACTTCCTACAGGAGTTCCAGCGCGACGGAATGACTGACGAAGTTACAGGAAAATTGCAACGATTGAAGACTAAGGAGATACAAAACATgaaaaggggaaaaataattgacGAAAACCAAGGAAATGACGAAGAGGGAGATAGTGAAGTCGACACGAAATTTCAACGTAATCTCAAAACGATGGACGCGAACGCAGATCGCAATTCTACCACAAAAGATGTTTACTTAAGCCAAAACATGACTCGCGCTTTCGATATCAGAGTTTTAACACCAGATGCACGAGTGGTCTATGGAGCCAGCGATCCGTACGACCAGCTGAACTATGGagaatgtttcttccagccaaCGCTTCATAAAGCGGAGTGCAATGCATTCTCTTTCGCCGAGTTCGTGCTGGTGATGCGAAGACCATCGTACCACGCGGGAGATGTTCGTGTTTTAAGACTAACTCACAAGAATGAAGCTTACAAAGATCTGCACGATTGTATCGTGTTTCCTAACCGGGGAACGCGTCCACACGCCAACGAATGTGCCGGGGGTCGGGTAGGTGGAGACAAGTATTTCGTGTGCTGGGATAAAAGTCTTCTGCCACGTTATATTAGCAGTCCATATATCGGTTACATATCGAGTTCTTCATCAAAGATCGCCAGCAAAGTGAAAGAAGTTTCTAAGAGTCTTACGTGCATGGAGAAAAAGCCTGCAACTCACttggaaaagaggaaaaagcaGCAACAATCACACCAAGCGCTGATGGAGTATTTTGGTCATTTCAAGGATTACGACAACTTACGCTCGCGCGGAACAGAGCTCTTCATCAAGTATGCCTCCCTTTTCGGTTCGACTTGTACCGAATGTGAGCAGCTCAAGGAAATGTTTCTGAGAGAGTTCGACTGGAGTGAGCGATACGATCAAGTTGACAAGAAACTGGGAGAGCTCGAGCAAGCTtgcgaaaaagaaattaatggaCCCACCAAATTTTCTCACCAAGGGCAGCTCCATTCTCCATTACGCCCTCCCGGCTTGTGGAATCGTGTTTTAATCTCGCTGCAGTGGAAGAAGCCGCCATTTTGTCCAGGTGATGACGTCTGGAACAAGATGAAAGCTACAAGCGTTACCTTTGTCGAATCACAGATGAATTCAACAGTCGATGTAAAAGCATGAATTTTAACTTCACGTGGT

Protein

Uniprot

Uniprot term	Description
Q9LQV2	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1
O82504	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1
Q7XM31	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05183	RdRP	RNA dependent RNA polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007855	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003968	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0030422	Biological Process	siRNA processing	Interproscan
GO:0031380	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11699	RDR, RDRP; RNA-dependent RNA polymerase	EC:2.7.7.48	Chromosome and associated proteins	ko03036	deepkoala