Gene detail

Detailed information of XP_020609179.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1963:232847...235714
NR annotation: XP_020609179.1, LOW QUALITY PROTEIN: uncharacterized protein LOC110047780 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110047780

ATGTGTGACCAAGCTAAGGGCTCAGGATTTTTTAGGCATCGAGCAGGTCGAATTGGGGCCTCAGTTAGTGGTGCAGTGTATCGCAGTAATGTTGCTCAACCTTCACAATCATTAATTAAGTCCATTTGCTATCCACACCTTTACAAAGTTAACACCAAAGCAATCAAGCATGGCTGCAAACATGAAGATTATGCTATGAGGGCATATGAAGCTCACATGAAAAACACCCACATTAACTTTCAACTCACACGGTGTGGGTTGTTTATTAATAAGAAGTACCCTTTCCTCCACGCCACACCAGACTTTTTAACATCATGCGATTGTTGTGGGTTGGGATATGGCGAAGTTAAATGCCCCATTTGCATCCAAAATGGTGACTTTGAAAAGTCGAAGAAAAGAGCTCTTGTTTGGAAAAAGTCAATGGTCTCTTTAAGCTAAAAAGATCACAACTATTACTTCCAGGTTCAACAGCAGTTGTTTACCTTACCGGAAAGAATGCATTGTGACTTTGTTGTCTGTGGAATTGACTCCCATTTAAATGCACACTTAATGACAGACAGAATTTACCCCGACACGCTGCACTTGGAAACAGTTTTAAAGAAACTTGAAGCTTTTTGGAGAATGTGCATTCTGCCTGAGATCTTAGGGAGGTGGTTCACGAGGAGATGTGATACACCTCCAAGTGTTCCCAGTGACAGTGGCATTTGCTTTTGCAGAGGCCAGCCCAGTGATCATGTAATCTCATGTAGTAATGTGGACTGCCCTTATGGTAAATTCCACACCACATGTCTGTCACTTGTTGAGGTGCCATTGTTGAAGACATGGTACTGCCCATACTGTAGTAGATTGCCACAGTTCAAGCAAAGGAGAAAAACAGAAAAAAGCAAAGAGCCACCTGCAGTCAACCAGGCTGCCATGGAATGTAGCAACATTTGTATTTGTAATGTCAGTGCAACCCCAACTGACAGATTACTTGAGTGTCACGGAACAAGCTGCGGGAGTGGACACTATTTTCATTTGAGTTGTTTGGGGCTGAAAAGGATGCCAAACAATGCTAAGACAACTTGGCAGTGCGAGGTTTGCAAGAAAAAACAAAAACCTAATCTAGGGACTAAACCTACTACTTCTACTTCTTTTGCTGCTCGTTCATCCCCAGTTTCAGCAGATTCGAGTGTTTTAAGTGATTCAAGCAGCGTCAGTGATGATGAAATTGAGATCACTAAGGAAACTACAGGCACTGTTGACAAATATGGTCCCCTAGCAAAGCTTCAAGATTCAGACTATGATATAATTAATGATTCATCCGGTTGGCTTAATGGTGACATTGTACAAGCAGCACAAGTGCTTATACAAGACATCAACCCACTACTCGAGGGCCTACAACGTCCAACCCTTGGATGTGTACGGAACTTTGACGTTGTTTCAGGTGAATTTGTCCAGATTCTTCATACAGGCAGTAATCACTGGGTCTGTATTAGTAACATAGGATGTTTGCCTGGGAAAGTACACCTGTACGACAGCCTATTCCATGATGTCATTAGTCAGGAAATAGAGGATCAGACCAATGACCTGTTAGGTGGAGATTTGGTTTCACTAGAATTTCTTTTACTGGCGGAGAGACGTGTGTTAGAGGCTGAACTAAACAGCATAAAAACAGAGAGTGGCCATCCGTTTAACCTAAAACACCTCGAGCCAAAGCGACTGAACATGACTCCAAGAACAAGCAGTGCACTCCAGCAACAGTCACCTGAGGCTGCAATCAACGTAAGTTTTGAAGTGAGCATGACCACTTCAAAGCAAAGCCCTCAAACAATTCAAAATCCATTGGACCGAAGAGCAGTGGAACTGTCAGAAAATCTAAAGCTACTAGAAGTGCAAGTCGAAAGTGCCAAAAGTCATCTACAGGGGAAACAAAAAGCCCTTCAAGAATTACCAAATGTTCATGAGAGATGCGCAAAAGTGTGCACTATTTGCCATACGTCTGGCCACAACAGAACAAATTGTAAGAAAATTCCTTGTAATGATGTCAACACTTGTAAGCTAAAGGACGAGTACCCAGAACTGTTGGCCGATATTCGCACATTAGTGTGA

Transcript

rna-XM_020753520.1

AGGCTTCAGTTCTTAGCTTAATAGATCCGTATGCCGAGCAGTTTGTAGCAAAAAGCCAAAACGTGCCTGTTATTTCAGATCTTTATGACCCCAGCAACTTAGATCTTGATTATCCAGAACTGCTGGAGAAGTGCAAGGAAGTCAAGATCAACGTGTCAGACGAAAACATAAACATAgtttaacaggacatgtgtgACCAAGCTAAGGGCTCAGGATTTTTTAGGCATCGAGCAGGTCGAATTGGGGCCTCAGTTAGTGGTGCAGTGTATCGCAGTAATGTTGCTCAACCTTCACAATCATTAATTAAGTCCATTTGCTATCCACACCTTTACAAAGTTAACACCAAAGCAATCAAGCATGGCTGCAAACATGAAGATTATGCTATGAGGGCATATGAAGCTCACATGAAAAACACCCACATTAACTTTCAACTCACACGGTGTGGGTTGTTTATTAATAAGAAGTACCCTTTCCTCCACGCCACACCAGACTTTTTAACATCATGCGATTGTTGTGGGTTGGGATATGGCGAAGTTAAATGCCCCATTTGCATCCAAAATGGTGACTTTGAAAAGTCGAAGAAAAGAGCTCTTGTTTGGAAAAAGTCAATGGTCTCTTTAAGCtaaaaagatcacaactATTACTTCCAGGTTCAACAGCAGTTGTTTACCTTACCGGAAAGAATGCATTGTGACTTTGTTGTCTGTGGAATTGACTCCCATTTAAATGCACACTTAATGACAGACAGAATTTACCCCGACACGCTGCACTTGgaaacagttttaaagaaaCTTGAAGCTTTTTGGAGAATGTGCATTCTGCCTGAGATCTTAGGGAGGTGGTTCACGAGGAGATGTGATACACCTCCAAGTGTTCCCAGTGACAGTGGCATTTGCTTTTGCAGAGGCCAGCCCAGTGATCATGTAATCTCATGTAGTAATGTGGACTGCCCTTATGGTAAATTCCACACCACATGTCTGTCACTTGTTGAGGTGCCATTGTTGAAGACATGGTACTGCCCATACTGTAGTAGATTGCCACAGTTCAAGCAaaggagaaaaacagaaaaaagcaaagagCCACCTGCAGTCAACCAGGCTGCCATGGAATGTAGCAACATTTGTATTTGTAATGTCAGTGCAACCCCAACTGACAGATTACTTGAGTGTCACGGAACAAGCTGCGGGAGTGGACACTATTTTCATTTGAGTTGTTTGGGGCTGAAAAGGATGCCAAACAATGCTAAGACAACTTGGCAGTGCGAGGtttgcaagaaaaaacaaaaacctaaTCTAGGGACTAAACCTACTACTTCTACTTCTTTTGCTGCTCGTTCATCCCCAGTTTCAGCAGATTCGAGTGTTTTAAGTGATTCAAGCAGCGTCAGTGATGATGAAATTGAGATCACTAAGGAAACTACAGGCACTGTTGACAAATATGGTCCCCTAGCAAAGCTTCAAGATTCAGACTATGATATAATTAATGATTCATCCGGTTGGCTTAATGGTGACATTGTACAAGCAGCACAAGTGCTTATACAAGACATCAACCCACTACTCGAGGGCCTACAACGTCCAACCCTTGGATGTGTACGGAACTTTGACGTTGTTTCAGGTGAATTTGTCCAGATTCTTCATACAGGCAGTAATCACTGGGTCTGTATTAGTAACATAGGATGTTTGCCTGGGAAAGTACACCTGTACGACAGCCTATTCCATGATGTCATTAGTCAGGAAATAGAGGATCAGACCAATGACCTGTTAGGTGGAGATTTGGTTTCACTAGAATTTCTTTTACTGGCGGAGAGACGTGTGTTAGAGGCTGAACTAAACAGCATAAAAACAGAGAGTGGCCATCCGTTTAACCTAAAACACCTCGAGCCAAAGCGACTGAACATGACTCCAAGAACAAGCAGTGCACTCCAGCAACAGTCACCTGAGGCTGCAATCAACGTAAGTTTTGAAGTGAGCATGACCACTTCAAAGCAAAGCCCTCAAACAATTCAAAATCCATTGGACCGAAGAGCAGTGGAACTGTCAGAAAATCTAAAGCTACTAGAAGTGCAAGTCGAAAGTGCCAAAAGTCATCTACAGGGGAAACAAAAAGCCCTTCAAGAATTACCAAATGTTCATGAGAGATGCGCAAAAGTGTGCACTATTTGCCATACGTCTGGCCACAACAGAACAAATTGTAAGAAAATTCCTTGTAATGATGTCAACACTTGTAAGCTAAAGGACGAGTACCCAGAACTGTTGGCCGATATTCGCacattagtgtga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR019080	Domain	YqaJ viral recombinase	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47526	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16060	BIRC2_3; baculoviral IAP repeat-containing protein 2/3	-	Ubiquitin system	ko04121	deepkoala