Gene detail

Detailed information of XP_020609351.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1974:81897...86739
NR annotation: XP_020609351.1, double-stranded RNA-specific editase 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110047936

ATGTCGGACAAAATGGCGGAAGCGTCAGAGGCCGATTGCATGGATGCGAAAGATTCAATGAATACCGACTCAGAGGTGGTTATTCCTGGCCTTGGAGATCTACCAGTCTCTAGTAATGAAACATTAAAACGCGAATATCAATCAGGAAGCGAAAATGGTCACACTCCTCCGCTGGAAGACGACAACGAAAAGATGCAACAAGGAGAAGAACCCGATTCCGGGACGCCGCCACCGAAAAAAAGAAGGCGGTCGAACAAACGCAAAGGTGACATCCTAGGGGTTCAAGGACCGAAAAATGCGTTAATGCAATTAAACGAAATACGACCTGGTCTTACTTATAACGTCCTTTCTCAAGAAGGCCCGACACACTGTCCCACTTTCTGGGTTTCAGTGGTTGTTGACGGGCAGACGTTTGAAGGAAAAGGATCAAGCAAACAAAAAGCTAAACACGATGCGGCCGAAAACGTTTTGAAGTCGTTCATTACTCAGATTCGTTCACCTGCTAAGCGGCTGGTCACAGAGGCCCAAGGCATTTCCACGGACTTCACTTCAGACAACACTGGAGCTCTTCTGAATACATTTGGAAATGGCGACCAAGCAATGGCAGATAGCGAAACTGAGAGCCCGAGTGAATCATCTGCCACACAATCGAATGCCGTTAAAGTTCCACAGATGCATAGTGAAGGGGGCAAACATCCAGTTGTGCTCCTAAACGAGTTTCATCCCGGCCTCAAGTACGAATTTCTTGGTGAAGAAGGCGATCAAAATGCGAAGCAGTTCAAATTTAAAGTCACAGTCAACGGCCAAGATTTTTTGGGAATGGGCAGCAGTAAAAAGAAAGGCAAGGCTAATGCTGCTTCCAAAGCTCTTTTTGCACTCCATAGCATCCGTACCTTTTACACATTTTCTGGCCAATCAGAGGCTCAGCCAACATACTTAGGACCTCCACCATCAGCCCAGTTGGAACAAGAAGCTGCAGATCTCATTGCCTATGCTGTGTTGACAAAGTTTCAGGGTCTTCAGTCAGCTATGGGAGAGGAACCAATTCGACGAAAAGTGTTGGCTAGCATTGTTATGACAAGCCGTGGTGACAGCGATCAAAAGTTTGAAGTAATAAGCTTGGGAACAGGAACCAAGTTTATCAGCGGTGAATATATAAGCGATCAGGGCTTAGCACTAAATGACTGCCATGGAGAAATCATTGCAAGGAGATCCTTTTTACGATTTTTGTACTCACAGCTTGGCCTGTGTGCCGAGGGATATGAGGAAGATTCCATATTTCAGAAGAAAGAGAATGGATTGTATGGTTTGAGAGACAATGTGGAGTTCCACTTGTATATCAACACTTCTCCATGTGGTGATGCTCGCGTTTTCTCGCCACATGAGCCAGTCAGTGGGGAATCTGATAAGCACCCTGGAAGGAGAAAACGAGGGCTTCTTAGAGTCAAGCTTGAGAATGGAGAAGGTACCATTCCAGCAATGAATAGTGACACAACCATCCAGACTTGGGACGGTGTCCTTCAAGGAGAACGCCTTCGCACCATGTCTTGTTCAGACAAACTGTGCCGATGGAACATCCTCGGAGTCCAGGGAGCACTTCTCAGCAACTTTCTTGAACCGGTGTACCTTCAGTCAGTGGTCCTCGGCAGCTTGTACCATTATGAGCACATGTCAAGAGCAATGTACCATCGTCTTGGTGATCTAGAAGGATTGCCTCCTCCCTTCAAACAGAACCGGCCCCTGATGAACGGCACAAGCACCGCAGAGCCGCGAGCAACGATTAGATCACCAAACCATAGTGCCAACTGGAGTGAGGGAGACGAGGGGTTTGAAATTGTCAATGCCCAAACAGGGACAATCGGTGAAGAACGTGCATCCTCGAGGCTTAGCAAACAAAGTCTTTTCAAACGTTTTATTTCACTGTGGAAGAAGCTGAAGCCAGGCATACCTGTTCCCTTGTCGTACCATGTTGCAAAAAGAGGCGTTGTCAATTATCAAACGGCAAAAGTGATTGTGATGAAAGGGTTTGAAAGACAGGGCCTTGGAACATGGATTAGGAAACCAGTTGAGCAAGATATTTTCCAGGGAACTGGTTTGCAAGCTCAGTCCGTGTTCAAGGAGAAACTCACTTTCAGACCTCACTCCACATCCAGCCAGACACACAGAAAGATGACGTTGTCTATTGCTGACCGTGCGTCCAAAGCACAGAAGATTAGGGTACTTCCAGCAGCTGGTATGGATCCTGAGGCACAGAGGTCAGAACTTATCAAGAAAGAAGATGAGAGGCTCAGAACCCAGTTACGTCGGGAAAATCAGCAGCGTAGAATGAGAGAGAGAAGCCAGGCAAAGGGCCTGAGTACCAGCTTCCTTGAACCTGATCGTTATGACGATGAAGGAGAAGATCTGGAACAGAGTTTGTTGGCCATAAAGAAAAAGTACAAGAAAAAGCTAGCAGAAGGATTTGCAAGTGAATCAGATGAAGCTGAAGAAAGTGACGGAGCAGGAGGATTAGAGAGTGATGAAGATGAGGAAGGAAAAGAGAGACTGTTGAATGCAAAGGAAGGCATTGAAGATGATGCACATGAAGGAAGAAAGAGGACTGGCAGTGAAGATGGAAACACACCGAGAAAGAAGAAAAAGAGTCGACAGATTGTTGAAAGTGATGAAGACAGTGATTAG

Transcript

rna-XM_020753692.1

TTCAAGCACATGTCGGACAAAATGGCGGAAGCGTCAGAGGCCGATTGCATGGATGCGAAAGATTCAATGAATACCGACTCAGAGGTGGTTATTCCTGGCCTTGGAGATCTACCAGTCTCTAGTAATGAAACATTAAAACGCGAATATCAATCAGGAAGCGAAAATGGTCACACTCCTCCGCTGGAAGACGACAACGAAAAGATGCAACAAGGAGAAGAACCCGATTCCGGGACGCCGCCACCGAAAAAAAGAAGGCGGTCGAACAAACGCAAAGGTGACATCCTAGGGGTTCAAGGACCGAAAAATGCGTTAATGCAATTAAACGAAATACGACCTGGTCTTACTTATAACGTCCTTTCTCAAGAAGGCCCGACACACTGTCCCACTTTCTGGGTTTCAGTGGTTGTTGACGGGCAGACGTTTGAAGGAAAAGgatcaagcaaacaaaaagcTAAACACGATGCGGCCGAAAACGTTTTGAAGTCGTTCATTACTCAGATTCGTTCACCTGCTAAGCGGCTGGTCACAGAGGCCCAAGGCATTTCCACGGACTTCACTTCAGACAACACTGGAGCTCTTCTGAATACATTTGGAAATGGCGACCAAGCAATGGCAGATAGCGAAACTGAGAGCCCGAGTGAATCATCTGCCACACAATCGAATGCCGTTAAAGTTCCACAGATGCATAGTGAAGGGGGCAAACATCCAGTTGTGCTCCTAAACGAGTTTCATCCCGGCCTCAAGTACGAATTTCTTGGTGAAGAAGGCGATCAAAATGCGAAGCAGTTCAAATTTAAAGTCACAGTCAACGGCCAAGATTTTTTGGGAATGGGCAGCAGTAAAAAGAAAGGCAAGGCTAATGCTGCTTCCAAAGCTCTTTTTGCACTCCATAGCATCCGTACCTTTTACAcattttctggccaatcagaggCTCAGCCAACATACTTAGGACCTCCACCATCAGCCCAGTTGGAACAAGAAGCTGCAGATCTCATTGCCTATGCTGTGTTGACAAAGTTTCAGGGTCTTCAGTCAGCTATGGGAGAGGAACCAATTCGACGAAAAGTGTTGGCTAGCATTGTTATGACAAGCCGTGGTGACAGCGATCAAAAGTTTGAAGTAATAAGCTTGGGAACAGGAACCAAGTTTATCAGCGGTGAATATATAAGCGATCAGGGCTTAGCACTAAATGACTGCCATGGAGAAATCATTGCAAGGAGATCCTTTTTACGATTTTTGTACTCACAGCTTGGCCTGTGTGCCGAGGGATATGAGGAAGATTCCATATTTCAGAAGAAAGAGAATGGATTGTATGGTTTGAGAGACAATGTGGAGTTCCACTTGTATATCAACACTTCTCCATGTGGTGATGCTCGCGTTTTCTCGCCACATGAGCCAGTCAGTGGGGAATCTGATAAGCACCCTGGAAGGAGAAAACGAGGGCTTCTTAGAGTCAAGCTTGAGAATGGAGAAGGTACCATTCCAGCAATGAATAGTGACACAACCATCCAGACTTGGGACGGTGTCCTTCAAGGAGAACGCCTTCGCACCATGTCTTGTTCAGACAAACTGTGCCGATGGAACATCCTCGGAGTCCAGGGAGCACTTCTCAGCAACTTTCTTGAACCGGTGTACCTTCAGTCAGTGGTCCTCGGCAGCTTGTACCATTATGAGCACATGTCAAGAGCAATGTACCATCGTCTTGGTGATCTAGAAGGATTGCCTCCTCCCTTCAAACAGAACCGGCCCCTGATGAACGGCACAAGCACCGCAGAGCCGCGAGCAACGATTAGATCACCAAACCATAGTGCCAACTGGAGTGAGGGAGACGAGGGGTTTGAAATTGTCAATGCCCAAACAGGGACAATCGGTGAAGAACGTGCATCCTCGAGGCTTAGCAAACAAAGTCTTTTCAAACGTTTTATTTCACTGTGGAAGAAGCTGAAGCCAGGCATACCTGTTCCCTTGTCGTACCATGTTGCAAAAAGAGGCGTTGTCAATTATCAAACGGCAAAAGTGATTGTGATGAAAGGGTTTGAAAGACAGGGCCTTGGAACATGGATTAGGAAACCAGTTGAGCAAGATATTTTCCAGGGAACTGGTTTGCAAGCTCAGTCCGTGTTCAAGGAGAAACTCACTTTCAGACCTCACTCCACATCCAGCCAGACACACAGAAAGATGACGTTGTCTATTGCTGACCGTGCGTCCAAAGCACAGAAGATTAGGGTACTTCCAGCAGCTGGTATGGATCCTGAGGCACAGAGGTCAGAACTTATCAAGAAAGAAGATGAGAGGCTCAGAACCCAGTTACGTCGGGAAAATCAGCAGCGTAGAATGAGAGAGAGAAGCCAGGCAAAGGGCCTGAGTACCAGCTTCCTTGAACCTGATCGTTATGACGATGAAGGAGAAGATCTGGAACAGAGTTTGTTGGCCATAAAgaaaaagtacaagaaaaagcTAGCAGAAGGATTTGCAAGTGAATCAGATGAAGCTGAAGAAAGTGACGGAGCAGGAGGATTAGAGAGTGATGAAGATGaggaaggaaaagagagactgttgAATGCAAAGGAAGGCATTGAAGATGATGCACATGAAGGAAGAAAGAGGACTGGCAGTGAAGATGGAAACACAccgagaaagaagaaaaagagtcGACAGATTGTTGAAAGTGATGAAGACAGTGATTAGTAGTGATAAATGAATACACAAGTGAAGGTGTGCATTCCTGGTAGAGTGAATTGTTGGAGAAAACAGAAGGAAAGACCAGCCATGATTTGCTGCTCATGATTGCACTGACGTTTGAAATCATGGCAGCATGAACTACACAGAAAGACATACAGGCACTGGGAAACATTGCAAGAAAAGGCCAAAGACAGTTGTTTTAGCTATAATGGTTTTACTCAAACAT

Protein

Uniprot

Uniprot term	Description
P51400	Double-stranded RNA-specific editase 1 OS=Rattus norvegicus OX=10116 GN=Adarb1 PE=1 SV=1
Q91ZS8	Double-stranded RNA-specific editase 1 OS=Mus musculus OX=10090 GN=Adarb1 PE=1 SV=1
P78563	Double-stranded RNA-specific editase 1 OS=Homo sapiens OX=9606 GN=ADARB1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF02137	A_deamin	Adenosine-deaminase (editase) domain	Family	Interproscan
PF04004	Leo1	Leo1-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002466	Domain	Adenosine deaminase/editase	Interproscan
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan
IPR007149	Family	Leo1-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10910	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003726	Molecular Function	double-stranded RNA adenosine deaminase activity	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006382	Biological Process	adenosine to inosine editing	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008251	Molecular Function	tRNA-specific adenosine deaminase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004000	Molecular Function	adenosine deaminase activity	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13194	ADARB; double stranded RNA-specific editase B	EC:3.5.-.-	Spliceosome	ko03041	deepkoala