Gene detail

Detailed information of XP_020609709.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2021:606807...613864
NR annotation: XP_020609709.1, probable LRR receptor-like serine/threonine-protein kinase At2g28960 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020754050.1

GCTGATCGCAGAAATCCAACTTCTTCTTCGCTCCGAAGTCAACTCTTCTATGTACTCTCCTTGGTTGACAACATCACGTGGAACACGAAAAAACTTACTTTCTCAGCGGTGGGCCGTATCTTGCCCGTTTTATTGCCACATCCGACAATGAGGCAAAGGACCacgatgaaaaaaattaaatttcttcgCTAAGAAGGCTAGAATGTCGTACAGAATGTCCCAGGTGTTGATTAGCACGAGTAGCACGCATTCTGCgatggaacaccaatatggcggatgAAGTTGGTTGTCATGACGATATGCAAATTTCATCACgcgagtgaaaacgctctataaaaATCCTTGTCCATGACACACTCAAGAACCTAGCCAATCAAATGATTTCCTCGTGCCAAGTCCTCGCTGACTAAGAACCTCTGCGGACGAGAAGGTTCGTCGTCAAAATTTGACGAACTGTTCAAGAATGTTAGCAAACTTGCAACGCGAAGAACGTATAGGAAGTGGCACGTTTGGAGTCGTTTACAAAGCCAAGTTGGAGGATCGATTGGTAGCAGAGAAAGCACTTCACGAGCACCTTTTCAAATGTCACGACCGGGATAGACATGTTGCAAAATTTGAAGCAGAGTGCAGGATTCTTGCAAAACTCAAACACAAGAACGTCGTTGAACTGTTAGAATTCGCGATTTTTCATTCTTCGCCTCCAGTGCTTATCACTGAACTCTTGGATCGCGACTTAGGGAAGTATATTACTTCATTGCATCCTGAGAAGATTCCGTTTCCAGAGGCAGTCTCGATCATGTCAGATGTAGCCGATGGGCTCGCTTATCTTCACGAGCATAATCCACCAATAGTGCATCGAGATTTAGCTTGTAAAAACATTCTCCTGACAAGGGAAAAGCAAGCTAAGATCGCTGATCTTGGTCTTGCTAAAGTGTTTCCACGTAATGGAAGAATGCATGCCTCTCCGCAACCACTAGGAACACCAGTCTATGCCGCCCCAGAAACGTTTTCCCCGGATGGACATGGTTATGGCACTGATCCGGTCGAATACGATGTCAAGgttgatattttttcctttggaGTTATTTTGATGGAGGTTAGCAATGGCAGTCCTCCAGTTGTGGAACCAGCGTGGCCCATCACCAAGGATCGCGAAAGAATTCCAGAAAAGAAGCGACGTGAAAGTGACATAAAGAAGATGGATGAACATAAGTTGAAGGAAATTGTACTTCGGTGTATTGAAGATTTCAGTAAGGACAGACCAAGTGCTGAAGAGGTCTCCAGGTGCCTTCAACATGAATGGTCCAAGATTCAACAGAAACGAAATATTGCTCATAATATTCAAGTTGCTCAAGTTCCCAAACTTGATATTGCTGTCCTTGGTCAGTCCTACGCGGGAAAGTCATGCCTTATTTCACGCTATTTTCACGGTAAGTTTGATGATAAAATTATACCTACGTCTGCTTTAAAATTGCGTACCATGAGGATTGACCTCCACGACAAAGAGTATCGCTTGCAAATTACAGACACTGCAGGAGATGAAAAGTATCACAGCGTTATTCTAATGCCACTAAAGCACTGTCAAGGCGTTGTGCTGGTCTTTGACTTAACAGATCGGCCTTCCTTCGTTGAAGGTATTCCTGAAATGATAAAGCTGGTTAAGCAGAATGCACCAGATAACACGAGCTTGATTTTAGTAGGGAATAAAGCAGACTTAGCTGATGCCCAGAAAAGTAGAcgaaaaattgtaaagaaagaCGCAGAATTTTTTGCAAAGGAACTTGGAATTCGTTACATCGAAACGAGCGCTTTGTCTGGGCAAAATGTCGACAGAGCCTTTGAACTGATTGCAAACGAGATCTATGACACCTTGGACTTGTCTGATATCGACACTTACACTACCAGTACAGACAACATACAGCTCACCAATGAAGGTGTTCCAGGCGATAGAACCTTTCTGCAGAAGGTGGTTGACTGTTTTACTTTTAGGTGGTTGCGGGAGCGGTGGAGATCGTAAAGTGGCGAATGGCCACGGCAACGGAAACGGAAATTGTAACACGGCAAAAGCAGCAACATTGGTACCAAGTAAAAATTCCTTACCGCCTCTGATTGAATATATTGGACTCTTGTCAGCATAAGACTTTCCGCTGTGGTTGGGAGAATTTAATACAAGACTATAGGCGTTGTTCGTTTTGTGATGAGTGAcgttattctcatcacctgtttgccTGACTTGCATTGACTTTTTGAGGAGACATAAGTTGCTGATCACTCAAGGCTGAAAGGTTTGGCATCTTTACAGAAAACTTGAACATAACACACTTTACTAAGTTATTCTCGGTATTGCTGGCTTTTGATAGACCTTGTTAAAGTTCTTGtgggatgtttttttttaaattgatacaggttttgttttcccttcaAACCCGGGATTGATTTCGTTTGCAAGAGGTCAGTCTCGAAGACATGAATTTTTATGGCTCAGATTGTACATTAAAGTTGTGGCTTTTTGAAAAA

Protein

Uniprot

Uniprot term	Description
Q54KM9	Ras-related protein Rab-11B OS=Dictyostelium discoideum OX=44689 GN=rab11B PE=2 SV=1
Q9M0G7	MDIS1-interacting receptor like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MIK1 PE=1 SV=1
C0LGD6	Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana OX=3702 GN=At1g05700 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045269	Family	Serine/threonine-protein kinase Atg1-like	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24348	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010506	Biological Process	regulation of autophagy	Interproscan
GO:0018105	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06103	CASK; calcium/calmodulin-dependent serine protein kinase	EC:2.7.11.1	Cilium and associated proteins	ko03037	deepkoala