Gene detail

Detailed information of XP_020609797.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2037:1161168...1214409
NR annotation: XP_020609797.1, vacuolar protein sorting-associated protein 53 homolog isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110048356

ATGGCGGCCGAAGTCGAAGATGATTTCTTGGAAGAGAGCTTGTCTAAACCTATATTCTACTCACCTGAAGTTGAAGAGGCGATATCTCAGGTTTTCAAGAGTGATGATCCCTTGGACGGCAAAGATTTTAACCCAGTGGACTATATTAATTCACTCTTTCCCACTGAACAGTCCCTAGCCAATATAGATGATGTTGTTAGCAAGATGAGGCTAAGAATCAGGGGTCTTGATGAAGAAATAAGGACCGTTGTTAGAGGGCAGACTAACATTGGTCATGAAGGAAGACAAGCTCTTGATGAAGCCAAACAAGCAATTCAACAGCTGTTTGCCAAAATTATTGACATTAAAGAAAAGGCAGACAAATCAGAACAAATGGTAAAGGAAATAACAAGAGATATCAAGCAACTAGACCATGCTAAACGACATTTAACAAGTTCCATCACAACTCTAAACCACCTCCATATGCTGGTGGGTGGAGTGGACACTCTCATGAATTTAACGAGAAAGCGGCACTATGGAGAGGTGGCTAATCTCTTGCAAGGAGTTGTCAATGTTCTGGAGCACTTCAAAAAGTACTTTGGAATTGCTCAAATTCGACAGTTAGCTGACAAGGTTAAACAAATCCAGAATGAACTTGGCACTCAAATTTTGGCAGATTTTGAAGAAGCCCTATCTGTCAAAGGAGTGAAGCCTCCTGCAGGACCAAACTCACAGTTAGCTGAAGCATGTCAAGTGGTGAATGTCCTGGATCCAAAAGTCAAAAATGAACTGCTGACGTGGTTTGTCAAGCTTCAGTTAGCAGAATATCAGCAACTGTTTAATGAATCATTTGAAGTTGCATGGCTTGATAAAATTGACCGCCGTTACTCCTGGTTAAAAAGAGCTCTGGTCAAATTTGATGAAGACTTTCAAGGAACGTTTCCTTCTGAATGGCATGTGGAGGAGAGAATTAGTGAAGAATTCTGCAGAATAACCAAGAAAGATTTGTCAAAAATCATGACAGCCAGAGTACAAGAAATTGATGTCAAACTACTGCTATTTGCCATCCAAAGAACAACAACCTTTGAAAGTTTATTGGCACAGAGGTTTGTTCATCATGGTTATGAGGACACTGAAGAACCAAAGGAGGCCACTGGCAAGCCAAAACAGTCAAAGTTCTTGGGGATCATTTCAAGATGTTTTGAGCCACATCTTCATATTTATATAGAATCGCAAGACAAAAACCTGTCAGAACTGATGGACAGGTTTGTCCAAGATTTCAAGTCCCTGGGGATTCCCATGGTGGAAGGAGATGGCAGCAATGTAGTGTTTCCCAGTGCTGGTGAACTGTTTGTATTCTACAAGAAATGCATGGTCCAGTGTTCGCAGCTCAGCACAGGGCCTCCTCTGCTTTCACTCACAGCAGCATTCCAGAAGTTTCTTAGGGAGTATGCCACTAGAGTCCTGAACAATCATCTCCCTGTAAAAACCACGGGTGGTCTTGCCAGCATCTTGAAGGATTCTAGTGAAGTGAAATTCAGCAAAGAAGAACAAAGCCTGACGTGCTGTATCCTATGTACAGCTGATTACTGTCTGGAAACCACTCAACAGCTGGAGGAGAAATTGAAAGAGAAAGTTGATCCCGAGTTGGCAGAGAAAATTGATCTCAATGGTGAACAAGATGTATTCCACAGTGTAATATCAAACTGCATCCAGCTACTTGTGCAAGACCTGGAGAATGCTTGTGATGCTCCTTTAACAGCGTTGATCAAGGTGAACTGGCAGAGCGTGGAAGCTGTGGGAGATGAGAGCTCTTACGTGACAGCGATCACAAATCACCTGAAGGAAGCTGTACCTCTTATTCGAGATTATCTATCGTCAGCTAGAAAATACTTCACCCAGTTCTGCGTCAAGTTTGTAAACTCTTTTATCCCGCGGTTTATCAGCAACTTATACAAGTGTAAGCCAATCAGCACAGTTGGAGCGGAACAGTTGTTACTGGATACTCATTCTCTTAAGACAATTCTGTTGGATCTTCCGTCCATTGGCTCTAAAGTGCAGAGAAAGCCTCCAGCGAGTTATACTAAAGTCGTGGCGAAAGGAATGAAAAAAGCAGAAATGATATTGAAGGTGGTCATGTCTCCACACGACCCCGCGGTTGGGTTTGTTGACAATTACATCAAGTTGCTTGCAGATACTGATACTTCCAACTTTCAAAAACTTCTGGACATGAAGGGCTTAAAACGCAGCGAGCAACACAGCATGCTGGATCTATTCCGCTCCCGTCTCCCCTCCCCTCCGGCAGGCAGTGTACCTGGAGAGTCCGCGACCGCTCAGTCCCATGCCACGACCGAGCAGGAATCGAGCAGAATAAAGAAGCTGGAGAGACTGATCAAGAAACCGTTCTAG

Transcript

rna-XM_020754138.1

ACAACGAATGCCAAGATCCCTTTGTAACCGAGCCAAGTGGTGACAGTCTCAGCGGCTTTCACCATTAGCGAGTCAAggtccaagatggcggccgaaGTCGAAGATGATTTCTTGGAAGAGAGCTTGTCTAAACCTATATTCTACTCACCTGAAGTTGAAGAGGCGATATCTCAGGTTTTCAAGAGTGATGATCCCTTGGACGGCAAAGATTTTAACCCAGTGGACTATATTAATTCACTCTTTCCCACTGAACAGTCCCTAGCCAATATAGATGATGTTGTTAGCAAGATGAGGCTAAGAATCAGGGGTCTTGATGAAGAAATAAGGACCGTTGTTAGAGGGCAGACTAACATTGGTCATGAAGGAAGACAAGCTCTTGATGAAGCCAAACAAGCAATTCAACAGCTGTTTGCCAAAATTATTGACATTAAAGAAAAGGCAGACAAATCAGAACAAATGGTAAAGGAAATAACAAGAGATATCAAGCAACTAGACCATGCTAAACGACATTTAACAAGTTCCATCACAACTCTAAACCACCTCCATATGCTGGTGGGTGGAGTGGACACTCTCATGAATTTAACGAGAAAGCGGCACTATGGAGAGGTGGCTAATCTCTTGCAAGGAGTTGTCAATGTTCTGGAGCACTTCAAAAAGTACTTTGGAATTGCTCAAATTCGACAGTTAGCTGACAAGGTTAAACAAATCCAGAATGAACTTGGCACTCAAATTTTGGCAGATTTTGAAGAAGCCCTATCTGTCAAAGGAGTGAAGCCTCCTGCAGGACCAAACTCACAGTTAGCTGAAGCATGTCAAGTGGTGAATGTCCTGGATCCAAAAGTCAAAAATGAACTGCTGACGTGGTTTGTCAAGCTTCAGTTAGCAGAATATCAGCAACTGTTTAATGAATCATTTGAAGTTGCATGGCTTGATAAAATTGACCGCCGTTACTCCTGGTTAAAAAGAGCTCTGGTCAAATTTGATGAAGACTTTCAAGGAACGTTTCCTTCTGAATGGCATGTGGAGGAGAGAATTAGTGAAGAATTCTGCAGAATAACCAAGAAAGATTTGTCAAAAATCATGACAGCCAGAGTACAAGAAATTGATGTCAAACTACTGCTATTTGCCATCCAAAGAACAACAACCTTTGAAAGTTTATTGGCACAGAGGTTTGTTCATCATGGTTATGAGGACACTGAAGAACCAAAGGAGGCCACTGGCAAGCCAAAACAGTCAAAGTTCTTGGGGATCATTTCAAGATGTTTTGAGCCACATCTTCATATTTATATAGAATCGCAAGACAAAAACCTGTCAGAACTGATGGACAGGTTTGTCCAAGATTTCAAGTCCCTGGGGATTCCCATGGTGGAAGGAGATGGCAGCAATGTAGTGTTTCCCAGTGCTGGTGAACTGTTTGTATTCTACAAGAAATGCATGGTCCAGTGTTCGCAGCTCAGCACAGGGCCTCCTCTGCTTTCACTCACAGCAGCATTCCAGAAGTTTCTTAGGGAGTATGCCACTAGAGTCCTGAACAATCATCTCCCTGTAAAAACCACGGGTGGTCTTGCCAGCATCTTGAAGGATTCTAGTGAAGTGAAATTCAGCAAAGAAGAACAAAGCCTGACGTGCTGTATCCTATGTACAGCTGATTACTGTCTGGAAACCACTCAACAGCTGGAGGagaaattgaaagagaaagttGATCCCGAGTTGGCAGAGAAAATTGATCTCAATGGTGAACAAGATGTATTCCACAGtgtaatATCAAACTGCATCCAGCTACTTGTGCAAGACCTGGAGAATGCTTGTGATGCTCCTTTAACAGCGTTGATCAAGGTGAACTGGCAGAGCGTGGAAGCTGTGGGAGATGAGAGCTCTTACGTGACAGCGATCACAAATCACCTGAAGGAAGCTGTACCTCTTATTCGAGATTATCTATCGTCAGCTAGAAAATACTTCACCCAGTTCTGCGTCAAGTTTGTAAACTCTTTTATCCCGCGGTTTATCAGCAACTTATACAAGTGTAAGCCAATCAGCACAGTTGGAGCGGAACAGTTGTTACTGGATACTCATTCTCTTAAGACAATTCTGTTGGATCTTCCGTCCATTGGCTCTAAAGTGCAGAGAAAGCCTCCAGCGAGTTATACTAAAGTCGTGGcgaaaggaatgaaaaaagcAGAAATGATATTGAAGGTGGTCATGTCTCCACACGACCCCGCGGTTGGGTTTGTTGACAATTACATCAAGTTGCTTGCAGATACTGATACTTCCAACTTTCAAAAACTTCTGGACATGAAGGGCTTAAAACGCAGCGAGCAACACAGCATGCTGGATCTATTCCGCTCCCGTCTCCCCTCCCCTCCGGCAGGCAGTGTACCTGGAGAGTCCGCGACCGCTCAGTCCCATGCCACGACCGAGCAGGAATCGAGCAGAATAAAGAAGCTGGAGAGACTGATCAAGAAACCGTTCTAGCTTATCGCTTGATGTGGGGGTAGAGGTGGAGGGGATTTACGTTAACATTAAGAACTCTGATGTGGAAAGCAGTGCGAGCTTGATGTTACGAACTCGTTCGGTTCCGACAAAGTGGTCCGATTTTGTGGTATTTTAATTCCGGATTCATGAAAAATGCAGAGAGTATTTAACCCTGATTCATTCACATGAATCGGGGACCAAAACTTTCCGAATTCGTGACGGATCCGGTAGTTGAAGAGCAGGAGCAAGTACTAGATAAGGGAGAATTCCTTCCTCCCAAGGGCTAAATGACTCCCCGGTTTTCGGCTTCACCGAAATTGCCAAGCAACGGACGTAACCAGATGTCTTTCGGAGGTGCAAAGACTCGGAAAACTCTTCAATTGGTATAAGCCCCCTGGATAAGGTCTTGAATTCTTGAGTTCTTGGGACAAACATATCTGTAAATatgcttaaatttaaaaagaattaatGGCGGAAAATTCTATTCGAATGTTTCACGAAAAGTTTCCTAAAATGTAGATTAGTagattcattttatttaaaatgacgaACATATATTATCACGAATTAAATGTCAAACTCCCCCAGCAGCTCTAACGGTTATGGTTTGCAATAAAATCTCTCTTCCACACA

Protein

Uniprot

Uniprot term	Description
Q5ZLD7	Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus OX=9031 GN=VPS53 PE=2 SV=1
Q8CCB4	Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus OX=10090 GN=Vps53 PE=1 SV=1
Q5R5J4	Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii OX=9601 GN=VPS53 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04100	Vps53_N	Vps53, N-terminal	Repeat	Interproscan
PF16854	VPS53_C	Vacuolar protein sorting-associated protein 53 C-terminus	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039766	Family	Vacuolar protein sorting-associated protein 53	Interproscan
IPR007234	Domain	Vps53, N-terminal	Interproscan
IPR031745	Domain	Vps53, C-terminal	Interproscan
IPR038260	Homologous_superfamily	Vps53, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12820	VACUOLAR SORTING PROTEIN 53	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000938	Cellular Component	GARP complex	Interproscan
GO:0042147	Biological Process	retrograde transport, endosome to Golgi	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20299	VPS53; vacuolar protein sorting-associated protein 53	-	Membrane trafficking	ko04131	deepkoala