Gene detail

Detailed information of XP_020610046.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2051:394619...419596
NR annotation: XP_020610044.1, Hermansky-Pudlak syndrome 1 protein-like [Orbicella faveolata]
Species abbreviation OFAVE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC110048616

ATGAAGTGTATTCTAATCATAAGCTCACTCCCTGACATTATTTTCATCCATGCTGATAAAGCATTTATCAAACACATCAACAAGATTTCACTCAAGGCCGGCTTTATTGGTGAAGACCACAATGAAGATCAGATGGATATGACTGCTCTATCTCAAATCTTTTCTCCAATGATCACATCACTAACATACATGAATGATTTGGGAAACCCCTATTCATCAATTCTGTGTGAAGATGGTACTTTGTTTGTGTTCAGTCAGTTTGATGACCTGGTTTTCACAGCTGTAAATGGTGATGGTGAAGAGTCGGAAGAGTTCCTCAAAAGGAAACTATCTGTTGTGTACAGGCTTTCCACACTACATTATGGGGCCTCCCTTGAGCTACTCAAGCCAGAAATTTTGTCTGCACAGAAAAAGGCATGGAAAACATTAGGTGGATTGATTGACACTTGGGGATTTCTAGCATCACAGCAACAAAGCTTCTTAGTTGAGGCCGTTGAGCGTATTCATGTCAATCTGAGTCTTAGTGAAATGAGCATTAGATTGCTGGAGACCGCACTAGGAATGGCCAAGAACAGTGGTGAACAGAATGCAGTTCATGCATTGTTACTGGTTAACACAAAGCTTCTTGCTCTATTTTCCAGTCGTAATGCATCAGAACTGAAGGCTGCAGACATTCTCTTGATCACAGTACTGCTACACAACATCTTCCCACACTCAAAACAAGCCATACCTCTAACACTCAACAGAACCCCTCCTCCCCTGGCACACAAGGTGATCCACAAAGGAGGACCCTCAGTGTCGCACAAGATTGTTGATGGTTCTGTAACACCATTGGGTTCTTCTACAGGGGAACAGAGCTCAAGAACACCTGTGCATTCAAGTCCTGTTGACATTAAAAAATCACAGAATTCCCACGCTGAAGAAGCTGGTTATTCTGGCTCAGTTGAAGATGAATTCTTTTATTCTCCACGATCTTCACCCACACCAAGTGATAGTATTGAATCTGCAGCTCAGGAGCTTCCAAAGACTCCTGTTACACCAAAAGAGTATTTTTCCACACCAAGGGCAGACACACCTGAGTATTTCAAGAAAAAGTTGGAAGATGAAGAAGTAGATGAAACTGATGAAGATGAACTGGAAGCAACTGGTCATTCACAAAGTACTGATCAGAGGCATGAGTATTATCGTCAACCTGTCTTCCTAAGTGCTGACAAGTGTCCATATTTACCTCACGTTCTTCACTTTGTGCGTCTTGCTACAGGGACAGTTTTGGTTCTTGTATGTGAGGCAAAACAGTGCAATGTGGCTCAGTTTATTTTCCAAGCATTACAGTCCTTGGCTTCTATCAAACCCACTGCCGAGCAGGGTCAGCGGACAGTACAGCAGGTTCAGGCTCTCATGGAGAGACTGGAAAACGCTGTCAAGAAAGTTCTTGATTCGATGAGGACCACGGTGGGGGTTGCTGTTGAGAATCAAGTTCGAACCCTGCGCCATCGCTGGGAGTTAGTCAAAAGAGGTGACTTAGTAAGCTTTCTGGCCTCTCCAGTCGGCGCTGAGATGTCTCCTCAGCTGGAATCATCCGTGTCAGAAATGACACGGAGCTTGAAGTCTCTCTTCAGTGTTTTGTTCTGTACGAGCCGAGGGGAGCCGTCCATCAGTCAACAACTTCTGACAACCATTTCGCAAATCAAAGAGATGCTTCAAACTCGGTTGACAGATTACGAAGATTACTTGCTGGTCAAAGGACAGAGGAATGTAACAATGACCGCCTATCTTGAGGACTTTCCAGGGTTGGTTCATTTTATTTACGTGGATCGTAGCAGTGACCAAGTGACCGCGCCTTCCATAAACACAACGCGTAGTAAGATCCGGGACTCACGTGACCCGTGCTATGTTATTAAACAGAAAATATGGGATATGTGGGCGTATATTCATTCATATTTACTGCTCGGTCACACTTTTATAGCTGTCCGTGACGGAGATTTTCTGTTCACGTATTGTCTGTGGTTTGAAGACACATCCGGGAACCCGGTTCAACTGCAAAACCCGTTGCCAGTCCTTCTTGGTTCTCCACCCCCTGGAATTATGTCGAGCTCATTTTACAAGGACTTAACGAAGCGATGCTTCCCGGCCTCCCCTGCGAATACCATCCGTTGTTATGAACTGATGTGTGTTCATGTTGGCTTGGTCCCAGTCCAGTTCGCCGTCAAACACATTCGGCGGCTGGCCTCCAAACTTTTCGAGACGTCACTGGGAGCACACTATCCAATCAGCTTGATACAGTGA

Transcript

rna-XM_020754387.1

TTGCTTTATTGTGAGCTTagttttttcattgtaaaactgTAACGCGGATACTAAGACAACTCTTTTATTATTCTTCGCGCAAATTTCCGCGAAATAccgcgaaattttttttttcccgagaCCAGCAAGGTCACATGTTTGAGATCACATGACTTTCTTGATCCCAGTACGCAATCAGATGCACACGGTCAATATGGCGGTTCTGGTTTTAGTGGACGACGATGTCATCGATATTTTGCTCGTGCGCAGGACATGGCACCACTTTCAATTACATTTATTGTAACTTGTTAAAAGTGAGGACGGTTGGTAACTTCAGGAACAGCTcagtttgactttttttctgttctgtgGATTTCAGCCAACTTATGATGAAGATACAAAATTTTTGCTTGACTTTCCATAAAGCAAGTGCTAAAATATTGACTTATTGAGAACTGCAACCACAGCTGCTATTATTCTGGGAAGCTGAAATAACAACAATGAAGTGTATTCTAATCATAAGCTCACTCCCTGACATTATTTTCATCCATGCTGATAAAGCATTTATCAAACACATCAACAAGATTTCACTCAAGGCCGGCTTTATTGGTGAAGACCACAATGAAGATCAGATGGATATGACTGCTCTATCTCAAATCTTTTCTCCAATGATCACATCACTAACATACATGAATGATTTGGGAAACCCCTATTCATCAATTCTGTGTGAAGATGGTACtttgtttgtgttcagtcagTTTGATGACCTGGTTTTCACAGCTGTAAATGGTGATGGTGAAGAGTCGGAAGAGTTCCTCAAAAGGAAACTATCTGTTGTGTACAGGCTTTCCACACTACATTATGGGGCCTCCCTTGAGCTACTCAAGCCAGAAATTTTGTCTGCACAGAAAAAGGCATGGAAAACATTAGGTGGATTGATTGACACTTGGGGATTTCTAGCATCACAGCAACAAAGCTTCTTAGTTGAGGCCGTTGAGCGTATTCATGTCAATCTGAGTCTTAGTGAAATGAGCATTAGATTGCTGGAGACCGCACTAGGAATGGCCAAGAACAGTGGTGAACAGAATGCAGTTCATGCATTGTTACTGGTTAACACAAAGCTTCTTGCTCTATTTTCCAGTCGTAATGCATCAGAACTGAAGGCTGCAGACATTCTCTTGATCACAGTACTGCTACACAACATCTTCCCACACTCAAAACAAGCCATACCTCTAACACTCAACAGAACCCCTCCTCCCCTGGCACACAAGGTGATCCACAAAGGAGGACCCTCAGTGTCGCACAAGATTGTTGATGGTTCTGTAACACCATTGGGTTCTTCTACAGGGGAACAGAGCTCAAGAACACCTGTGCATTCAAGTCCTGTTGACATTAAAAAATCACAGAATTCCCACGCTGAAGAAGCTGGTTATTCTGGCTCAGTTGAAGATGAATTCTTTTATTCTCCACGATCTTCACCCACACCAAGTGATAGTATTGAATCTGCAGCTCAGGAGCTTCCAAAGACTCCTGTTACACCAAAAGAGTATTTTTCCACACCAAGGGCAGACACACCTGagtatttcaagaaaaagttGGAAGATGAAGAAGTAGATGAAACTGATGAAGATGAACTGGAAGCAACTGGTCATTCACAAAGTACTGATCAGAGGCATGAGTATTATCGTCAACCTGTCTTCCTAAGTGCTGACAAGTGTCCATATTTACCTCACGTTCTTCACTTTGTGCGTCTTGCTACAGGGACAGTTTTGGTTCTTGTATGTGAGGCAAAACAGTGCAATGTGGCTCAGTTTATTTTCCAAGCATTACAGTCCTTGGCTTCTATCAAACCCACTGCCGAGCAGGGTCAGCGGACAGTACAGCAGGTTCAGGCTCTCATGGAGAGACTGGAAAACGCTGTCAAGAAAGTTCTTGATTCGATGAGGACCACGGTGGGGGTTGCTGTTGAGAATCAAGTTCGAACCCTGCGCCATCGCTGGGAGTTAGTCAAAAGAGGTGACTTAGTAAGCTTTCTGGCCTCTCCAGTCGGCGCTGAGATGTCTCCTCAGCTGGAATCATCCGTGTCAGAAATGACACGGAGCTTGAAGTCTCTCTTCAGTGTTTTGTTCTGTACGAGCCGAGGGGAGCCGTCCATCAGTCAACAACTTCTGACAACCATTTCGCAAATCAAAGAGATGCTTCAAACTCGGTTGACAGATTACGAAGATTACTTGCTGGTCAAAGGACAGAGGAATGTAACAATGACCGCCTATCTTGAGGACTTTCCAGGGTTGGTTCATTTTATTTACGTGGATCGTAGCAGTGACCAAGTGACCGCGCCTTCCATAAACACAACGCGTAGTAAGATCCGGGACTCACGTGACCCGTGCTATGTTATTAAACAGAAAATATGGGATATGTGGGCGTATATTCATTCATATTTACTGCTCGGTCACACTTTTATAGCTGTCCGTGACGGAGATTTTCTGTTCACGTATTGTCTGTGGTTTGAAGACACATCCGGGAACCCGGTTCAACTGCAAAACCCGTTGCCAGTCCTTCTTGGTTCTCCACCCCCTGGAATTATGTCGAGCTCATTTTACAAGGACTTAACGAAGCGATGCTTCCCGGCCTCCCCTGCGAATACCATCCGTTGTTATGAACTGATGTGTGTTCATGTTGGCTTGGTCCCAGTCCAGTTCGCCGTCAAACACATTCGGCGGCTGGCCTCCAAACTTTTCGAGACGTCACTGGGAGCACACTATCCAATCAGCTTGATACAGTGAGGTCAAACTGGTAAGGCCCGCCAAAAAATGAACCAACTTTGTCTTTTATCTCTGAGTAAACCAAGGCCTGCAGTCAGGGGCTGGAGATTGGAAAAAGAAGTGAGGATTTCAGAATTAAGATAAAAGAGTATGAATCCAAGAAGTGGAAATAAATCGAATTGTGTCGTCCTGCAATAAGAGCTGGGCACTAGGAAACGTTAATTAGATTACTTTTATATATTATCGAGTGTGAGCAAGAGAAgtggaaagaaaatgaattttcaagGTGTTCCGGAATTCGAAACGAGGAGCCCGAGAgtattatattttttataacAAATGATTTTATATAGAAATTTACACCGCAAGAAAGAGGATGTATTTGCCTTGTGATaagagaaaaatcaaacttttaaaataatatgCAAAGGTagggaagagaaaaaaaaaatgtttatgaaaGCGTATGACTGAAACGTTGTATTAATCGAAGAGGAAAGGAAGGCTATAGTACATGCATGCTGGAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92902	BLOC-3 complex member HPS1 OS=Homo sapiens OX=9606 GN=HPS1 PE=1 SV=2
O08983	BLOC-3 complex member HPS1 OS=Mus musculus OX=10090 GN=Hps1 PE=2 SV=2
Q60HF3	BLOC-3 complex member HPS1 OS=Macaca fascicularis OX=9541 GN=HPS1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005783 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19038 all species →	Fuz_longin_3	Third Longin domain of FUZ, MON1 and HPS1	Domain	Interproscan
PF19037 all species →	Fuz_longin_2	Second Longin domain of FUZ, MON1 and HPS1	Domain	Interproscan
PF19036 all species →	Fuz_longin_1	First Longin domain of FUZ, MON1 and HPS1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026053 all species →	Family	BLOC-3 complex member HPS1	Interproscan
IPR043970 all species →	Domain	FUZ/MON1/HPS1, third Longin domain	Interproscan
IPR043971 all species →	Domain	FUZ/MON1/HPS1, second Longin domain	Interproscan
IPR043972 all species →	Domain	FUZ/MON1/HPS1, first Longin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12761 all species →	HERMANSKY-PUDLAK SYNDROME PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0031085 all species →	Cellular Component	BLOC-3 complex	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20193	HPS1; Hermansky-Pudlak syndrome 1 protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.