Gene detail

Detailed information of XP_020610727.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2136:1045408...1055008
NR annotation: XP_020610727.1, LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020755068.1

atttttttcatttcagaactacatgtaaccATTTTACCGAGATCCAGCAAAAATGAGTTTAACAATTTATAATAGCTAGTTTCATATTACTTACATGAATATGatcttaaaaagataaaaaaaaaaacaagaatgtgattttgatattttgatttcatgactgaacagaaagagagaaaattgaCGGCTGAGGATCTGAAGATTTTATCTCTCTTCGTTCAGTACATGACACTTCCTTGATGATACCTTCTCCGCATCAGCCCAAAATATGCTTCAAATTCTCGAAAACTAGAGAAGAGATTCCATAAACTACCATAGAAAGCCGATCTCATGTATGTTAGTATCACTGgcatttagttttatttatagGACATTTCATCCAGAAAGGAGGAAACCGCACTACCTTCCGATGCCCACTTGTACGTGGTACCGATTGCGCTTAAAATTGATGTATGTCGTGTattttgaagcaaaacaaaagtaggccggtgatgaaaaacaaaagatccGATGTGGTGACCAGCTTTTTAACAAACAAGATTTACTTTCACACCATCAAAAGGACTTTTTATACCGTTATAAGTAAGACAGAGAGATTATACTTTCAACTAACGATCAGGTTGACTTGTTTTTAAAGCTTACAAATCCGAAGCGATTTTCAATTACAAGCGTAGTGGattcaattattttgttttaactgaaaCAATAACATCAACATTTACATGTCTGCCAAGCGACATGTTTTAACACGAATTCGAAATTCGAAATTAACACTTTGGAAGACACGATATTGAACTTCGGAAAAAATCCTTCGATTgaattttcccaaagaaaatatCTGAAAATATGTAAGACATAAGCGTTTAGTTACCTTGTTCCTGTTTTTGATCCTCGGAGTCCGTGTCGTTTAACGGCGTGTAAGCCGCCGAAGACATCTCACTTTCTTTCGGCCCTCAGCTGAGCAGGTAGAAGGCTGTTTTTACATCTCGAAGAGAAACCAACAGCGTCAAACCAAAACAATCGCTTGTCATTTGATCGATGGCGGCGGCATTTTTGTGCCGcgaagaatttcaagaaatatgTGTACGCGATTTGCCGTTAAACCCCCAATAAATAAACGTTCAACTGAAGAGTGTTGAGAGAAACGTCCAGATGAATTATGTATTAGTTGAATTCACCCTCTCCTACCTAATGAAGCGAAGGAAGTGGTGAATTAGAATTTACGATCGTACGATCCTCCTCTTTGCAAAGTGCGCCTTGTTCCTTTTTACCAGCGTGGTATCGCTACAGGGCATGCGTATTATAATACATATCATACTTAGTCTCCCACAGCCAAATTCAACATGGCTGCCAATGCAACCAGCTCGGCAGCGACAACAACTTCCAAGTCAAATCCttcgaaaaaggaaaaagacacTTTAATCGCCGTCCttcaatttttaaagaaaagcaagttATCTgaaacagAGAAGATCTTTAGGCAAGAGGTAAATTGTTTAGAAGCAATAGAAGAAATAAACCTTCAAACAACTCCTGACTCAGAACCAGATATCTCATCAGTATTGTCTGCTTATAACAGTGATGCAGATCCTACAAGATATGAGGACTATTATAGCAGTCTGCAAGCGTTTGTAGAAAAATCCCTGGATATATACAAGccTGAATTAGCCATGGTTTTGTATCCAATGTTTGTCCATATGTACCTTGAATTGGTCTACAAAGGCAGTGAAAAAGAAGCACAATCTTTCTTTGCCTGTTTCCGTGGAAGTCAAGAAGATTACCATGAAGAGGATCTTGGAAAGTTGGCTGCAATAACTCGACGTGAACACATGAACAGTAATGAACTCATGGGAACCTTAAGGTACCACATAATGTGACAGTCAAGAAGACCAGCTAAAATAACCAcatccattttgtttgtttgtttgttttttcaggatCAGCAACAGGAATTACTGCTTACTTTAATTCAGCAACATCTTCATTTTGATGTTTTTGAAGGAAGAccaagaaacaagcaaacaatagAAGCCACAGCTGGAGCAGTGACTGGGGAGGCAACATTTGAAGCCAACAAAAGCAAGGTATATTATGGGATTCCACCAGAGCCTGACCTCGGAGTTGTGATAGAAGAAGAaaatgaggatgatgatgataagGACAAACCAAAGaaatttctcttttatcGTTTATTACTTCACAGGAAGGACAGCGATAAGTTGATTAAGATAACACTGATGAGAGAAGCGGCCAAAAGATTAACCCTGGGTCCGGACACTCTTCCCTCCATCTGCTTCTACAGTGTACTCAACGCTCACGCCAGTTTAAACTCGGTCAGTATATCAAACGACTCGAGCCTACTGTCAGGTGGATTTGAGGACAGCAGTGTCCGTGTTTGGAGCCTCACTCCCAAGAAATTACGCATGCTCAAATCGCCCTCAGAACTCGCTCAAATCGACAAGGAAGCAGAGGACGTACTTGAGAGAATAATGGATCACAGGTTAGTATTTAAACGTCATTATTTTTATCGTGGCATCTGTGCACTCCTGACCCTATCTGCAACAGTTCATGTTCAGCTGACCTTCTCCAGATGTTTTTAGGCCCTCCTCGCTTTATTTCCCCTGGCGGGTTCAAGAATAGGcctaacagtttttcaaaagcccatatcgcaatccgttttaatcttcttcaatttctgTCCATCCGTACCTTCTTTTGTATTTGCTTGACATTGAAATGTTTCTTCACtgttttaaggtgattccttagtgttgcattgcgcatccctactgcgcacgatttt

Protein

Uniprot

Uniprot term	Description
Q15542	Transcription initiation factor TFIID subunit 5 OS=Homo sapiens OX=9606 GN=TAF5 PE=1 SV=3
Q8C092	Transcription initiation factor TFIID subunit 5 OS=Mus musculus OX=10090 GN=Taf5 PE=1 SV=1
P49846	Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster OX=7227 GN=Taf5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04494	TFIID_NTD2	WD40 associated region in TFIID subunit, NTD2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037264	Homologous_superfamily	TFIID subunit TAF5, NTD2 domain superfamily	Interproscan
IPR006594	Conserved_site	LIS1 homology motif	Interproscan
IPR007582	Domain	TFIID subunit TAF5, NTD2 domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19879	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan