Gene detail

Detailed information of XP_020610952.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2142:583284...595002
NR annotation: XP_020610952.1, hyccin-like isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020755293.1

AATGGCGTTCAGACGTCTGTGTTTAGATTTTTTTGTAGTTGATTACCCTCTTGTTACCGAGATAgctttttacatattttaacaTCATGTAATTAAGAGAAGACCGCTTTCTTCAGTAATACGTTCAGTgcgttttagttttattgttcCCAGCTAAAACATAGGGTGGTTAAATTTTGTGAGACAAAGCCAGCTTTGGGCAAGTTTTTAAGCAATTATAGTAGTATCCATCGGCCTTGATCCAGTCCTTGCTATGGACCTGGAATCGGTAAAAAAAGTTTTAGAGTCTTTTTGCAAATCTGAATCAGCATCAAACATTCAGCATTTGAAGAATGATAAGAACCTTGTGAATGGAATAATTCAGAACTTACCAAGTCTGTATGCACACGAGTTGAGTAATCCAGTTTATAACAGTCTATTTGAGTTGTATCGTCAAAGTGGAAGCGGAGGACACCCTTTTGTTCTTCAATTTGTTCCAGTGTTAATATGGACTTACTTGTCAGCCACAACAAGAAGGGATGAGCTGGTTTATGGCAAGCTGGAGGCTCTACTATTGGCTATCTACAATGCTGAAGTAGTAAATGAAAAAGGAGAGCAGAAGATCAAGTCATTTAGGTTGCCATCACTTTCAAGACCGTCAATTTACCATGAGCCCTACCAAAGTTCCACAACTTCATCAACACTAACTGAGACAGCACTGAGTCGACATGAGCAGAGTGAGACAATTGTGACTTTACCAGGACCCGGAAAACAACTCAATAGAATAACTGCTACACACAGGCTTTCTGTGCTTAGTGTCATTCTGCACCAGTATAACTCAAACATTGTCTACATGCCAGAGGCCTCTCATCACAGCTTTTGCATCATGGCATTAAGGCTGGCAAAATGTGGTTTTTACAAACTTTGCCAACGGAGTAAAGAAGAAATAGAATCTCATTTCTCAAGTGACGAGCTGTCAAGATTGGTGAACCATCCCAGGATAACACTAAGCACAGAGCTAATTCAGGAGATGACATATGGAATATATTTCCTGATGTACAATGGTCAAAGGACTCTTGCTACCAAGGCTCTGGAGGATCTCCACTGGCGTGCATCACACAGTCTGTTGGCTCCTGCTCATCTGCTGACTGATGCCATTAAACATTCAATGGATCAAACAGATGGCCTCCCCAGGGATGGTCCCCTAGGGCTGGAGATGTACTTGTCAGATACACAGACTGCCCAACCCATCAGCAGTAAGACTGTGCCCTCAGTCAGCGGCACTGTACCAGAAGCACCAGtgACTCCTGGAAAAATACTGGCTTTGAGTACAAGTGGAATGGAGGTAACTCGCCTCAACTATGAATTTCCAAAGGACAATGCTGTGGACATGGAAGATATTGAAGTCGAAGTTCATTCAAGGAAAGCCAGTTCTTCTTCAGATCACTCTGCTAAAGAAGCGAGCAAGTCGCACAAGAAGGCCAACAGCCTGGGGCATTTCAAGCTGCCTTTCTTGTCGACGAAGGAGCATATTGAACTTCAACCCATACAAGGGTCGACGAGGCCGAACTCCTCCGAATCACCACGAGTTGTTTTGTCGGAGGTCAATGTACCGTCGGAGAAATCCGAAGATGTCGAGTTACTCGCGACAAGTTTCAGCGACGAGGTTTTTGATCACAAATTATAAGACGTTTTCTCCTTAAGATCATTCGTTGACCAATAgtgttaaaatataatttttccgTTCAATATCGACACATTGTCAAAATTACCACCaaatttttgaacattaaatgaaaaaacaaaaaaaggaagaatGTAATCCgtagaaaatttaatttcaagtttgCCACTGCATGGGTTTCTTAACTATAGCTTTCGTATACATTGTAACCAATACAGAGGTATTAAAAGTATGTTTTATAAAATTATTGGATGTACACATACATATGATAACATTGGTGTATAATATTAAGTCAAATCCTTCAGAATAAAGTGTGACCTTATGTGAA

Protein

Uniprot

Uniprot term	Description
Q5ZM13	Hyccin OS=Gallus gallus OX=9031 GN=HYCC1 PE=2 SV=2
Q9BYI3	Hyccin OS=Homo sapiens OX=9606 GN=HYCC1 PE=1 SV=2
Q6P9N1	Hyccin OS=Mus musculus OX=10090 GN=Hycc1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09790	Hyccin	Hyccin	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018619	Family	Hyccin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31220	HYCCIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0046854	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan
GO:0072659	Biological Process	protein localization to plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21844	FAM126; protein FAM126	-	Membrane trafficking	ko04131	deepkoala