Gene detail

Detailed information of XP_020611552.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1099:526537...532182
NR annotation: XP_020611552.1, short-chain dehydrogenase/reductase family 9C member 7-like isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020755893.1

gcacgagtgagtttttcaaaaattgcactagccgcttcggcgagtgcaaaaAAAGTCATCATGCTTTGATATAAAATGAACAAGAACGCACGAACGAATTCGGTTTTAGCCGCGCACTTTTCTCCAAAGACTAGACTGAAAAATTCTAAACTTGTGAAATTTTATAGTATTAGCATATTTTCTGGCATCAGTGAGCTAGGGTTTAATTTGTGACCTTGTCTGCACCTATATTGCAGCTGTGGGTGGTCATATTTCACACAAATTACAGATAACCTGTGTATTCACAGGCCGGTTTCTGTGTAATCTCAATTCGTGAGTTGTGACTGACGAAAACTACCATCGCCGGAACGAAAGATTTCTCGTCCGCCGCCATGTGGCTTGTGATTATGACGATAGCAATTGCTGCATTAATCGTCGTTTTGATGATACCTTGGTGGACGCGCAAAGTTAATTTGAATATAAACGGAAAGTTTGTTCTAGTCACGGGTTGCGACTCGGGCTTCGGCCGTGAAACAGCCATGAAACTGGACAAGATGGGAGTCCATGTGTTGGCGACTTGTTTAACGAAAGAAGGAGAGCAGAGTTTGAAATCGGTGATGAGCGACAAACTGATAACATTCCAGATGGATGTGACAAACTCACAACATATAGAGGAAGTCTttcaaaaagtaaagaaacttCTCGATGGCAAATCAGGCCTATGGGGACTGGTCAACAATGCTGGGATGTTAAGTATTGGACCCGCAGAGTGGGTACCACTTGCTGATTTCAAGAAAGTAGCAGATGTTAACTTGTGGGGAGTGATGGACGTGACAAAGACATTCCTACCACTGGTAAAAAAGGCCAAGGGACGCGTCGTGTTTGTCGGCAGCGTAGCAGGTGTAGTTTCGCCCCAAGCGTTCTCTCCATACTGTATTACCAAATATGGCGTTGAGGCATTTGCGGATTCTTTGAGACGCGAGATGCGCCCGTTTGAAGTGCAGGTCAGCGTTATTCAGCCTGGTGCTACGCAGACTCCGATGTTGAATGATGAACTATTGGCATCTCGCTTAAAAGAACTATGGGATAACCTACCATCAGACAAACGACTGGAATACGGCGAAGAATATCTTAAGAACGCCATCCAGGGATTTCGTGATTGGTGCAAATCTGGTTCCAATAAAGTGAGTCACGTGATCGACGCGATTGTGTCGCCGTTGACCTCACAGTTTCCGAAGGAGCGATATGTGATTGGCTGGGACGCGTGGCAATTGAAACTAAGTTCCCATCTGCCTGAAGTGCTGCAAGATCTCCTCGTCAAAGATTTCCCGTTCAAAATCGTGACACCGCCTGCCCAAGATGTCCCTGAATGTCACGTTAACGGTACAACCCACTGACTACTGATAACACTAGAGGAGCTGCGTGGATTGAGAAAATCAATACTTTCTTTTAgtcaaaaattactttaacactgACTAGCTCAGCATGGACTTTTCTTGGTCAAATATGTTACAAAGGTCGCCGCTGAGGATACACTCttaattttttgtattaaagCACAtctaattttaaggccaaacgTTCACAGTTTTTTCCTTCGCTCTTTGAGCCTTTCAGTGAAGTTACCGTTACCATTTTTAATCGTTTATTCTTTGGAAGTTTTTTCTCATAGCTTCCAATAgctgtaaatgaaaaaatacaacTGATAGAAACCAAAGTTCAACCTTTGTAAGGAATTCGAAtctgactgttttctttgtagttcATTTGGGTTAATCTCAGCACCAACCGACACCGTACTTATGAAAAGGTTCTCACAAGAAAAGACTGTAATTATCACTTAAGTTACGAATTACTTTACTAAAGCAGTAAGTCGATTtgaagaatgtttttttcagccGTGGAATATTTATGTACAGGAGAGCTAATATACGTATATGCATATATCTCTGTTCATTTTATAAagtttaaattgtaaaaatgtaacacaaacagcggtgataaacattttaaaaacatgcattttatgaacttgacgtttttaaaatgtttatcagtttgtgttatatttttaatcaagccacgatggccgaagaccaagagtttaaaTTGTAAAACTGAGTTATTTGATTAATGACAACAAAGAACTAAAGCAATGGCTAA

Protein

Uniprot

Uniprot term	Description
P55006	Retinol dehydrogenase 7 OS=Rattus norvegicus OX=10116 GN=Rdh7 PE=1 SV=1
Q8K3P0	Short-chain dehydrogenase/reductase family 9C member 7 OS=Mus musculus OX=10090 GN=Sdr9c7 PE=2 SV=1
Q02338	D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=BDH1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43313	SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0008202	Biological Process	steroid metabolic process	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24425	SDR9C7; short-chain dehydrogenase/reductase family 9C member 7	EC:1.1.1.-	Enzymes with EC numbers	-	deepkoala