Gene detail

Detailed information of XP_020611818.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2215:1314246...1320668
NR annotation: XP_020611818.1, uncharacterized protein LOC110050254 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020756159.1

ttccgaccgctggtcaaggggaacgaagactctgggaacgagattgggtgAGTGCCAATCTCGTTCCTCGAGTCTTCGATTCGTTACTTACTGCTCAAGTTTGACTAAACGAGTGACTCTTGTGAGTTCCGTTACCGGCTCCATTGTGACTGGTTTTAAAACGATGAAAATGGCGGAAGTCCAATATTTTTGGACATCCAAATCCTTCCAAGCGGAACTTTCTAAGGTCGCTCGTTTGCcaaccgctggtcaaggggaatgAAGATTCTGGGTACGAACCCCAGGTTGTACCTAACTGAAACGTTAGGGTGGAGAGACCTCGTCAAACAAATTGCCAATACGCAttaggactcgttttgaaaaagagCCAAAAAGCAACACGGAAATAGCTTATTACGGTGGTTTGAAAGTTTGACTATTTCAAGGGATCTGTAAGCTGGACAGAACTGAACAACTTTTTCCCACaaagctttattatttttcaaaacctCTAAAACCGCCATAAAAAATCACTCTTTCATTAAAATGTTCTCATTTCTGGCATCGATTTTGTTCTAAAGGACCATTGGCCTACTGAACAATAAGAAATTCATAACGTCAGCTTTTTACCACTGAGACATCTCACTGCTTAGCAACAAATGGCACAGAAAACCCTTAAAACCAACTGGCTCAGAGTTACCGTCCTCATTTTGGAGTCTCGTGAACggaaaaaatcataaaatatgGTATAACATAAGCAACTGTATATATCTGTGATGAGAACGTTTTCTGAATGATTTATTTGCGCCAATTTCTCTAAGGCTGAGAGACAAATGAAAACCAGGGGGAAGAGATTTCCTGGTCAACTTGTTGAAATTCCAAGTGAATTCAAGAGGCACGTGACTGGCAAGGGAGGAGATAATCTTCGAAATATCAGCACGTTGACTGGGGCACAAGTGTTTCCTCGAGGAAATAAGCGCTACGAGCTGAGAGGATCAGAGATAGGAGTAAAACACGCTGAACTACTTTTGAAACGCAAAGTGgcTTCAGCGAGAGTTAAAACGGACATCATTTGTTGTTACATTGACGATAGGAATCTGCCAGAAGGGTGTGATCTTACGCTTGTGCCTGTTGAAGAGTTGGAGCGCATGGTGTTACCAGGATCACGCTCCCAGTATCGGCTGAGACCTTCTGAGGAATACGAACTGGCAGCCGGGATTCAAAGCGACATTCCTTCTTATCAAGCTAACCTCGTGGGCCATGTACTGGCATGTCTACGTAAGATTAAGCACGAAATTGAGTCAAAGAAATTTCAGGAAGCTGACATGTGGTGTCACTTTGGTACAGCTATCATCCGCGAACCCGATGAAGCGGATGTTGCCGAAATATGGAACATTACAGAGGCGGTTGCCAAGCTACAAAACTCTGCATCGGGCAAGAAAAGCGATTGGCGAATTGCTTTCAAGGAAGGCGTTCAAATTGACAAAAAGGTTTTACAGGAGACGTTTGGTACACAGCCAGATGAAGATGATTTATACGCGGCAAGATATGATTTGTGCTTTTTAACCCCTCGAGGTAGATCAATGAGATGCAAGGTGTGGGTCGCTAAAAAAGGTGTACAGAGCAAGCTGCAGGAACTTCCAATCCCATATAGTGACGTTAGAAATATTGTAGAGGAGCTTCATCTTGAAGACGAGTGGACGAGATCACGATGTCGGGCATGGTTGGTTCTTTCATCTCCCAAATATCTTCAGGCAGACATAATATGTCCAGGTTGCGTGGTCGACTGTAGAATCATGATAAGACCATTATCAACTTATGCAACTCATAGTAGCAAGTATGAACAGGAGCAAACCAAGGTCTTAGCTGGTTATCTGTCCAAGCTAACATTTACAGAGGCTAATGGAATCCACCTTCCGGACGAAACCCTGCCAGAAGGTTTTCTGTTCAATTACCAGCGCTGCTCGCGTCGAACGATGTGTGTACCACGTGACGGGTTTACTTTGATTGTTTCTGAAGAGAGCATTTGGTGCCGTGACGACAGAGGAGAGCAGAACAGAGAAACAACCGATCTCCATCTAAGCTGTGAAGAGTGGTACCGTGCGCTCAGTGGTGAAGACTGGGAACCAGAAACGATAGTTTCCAAACTGCCTGAATTTCTCCAGTTTGTCCATCAAGTTCAAGATTTTCTGTCATTAAGTAATTGCAGTGTATGAAAATCTGCCATTTATGATACCCAGTTCTTTACACTTCTTTACTACAAAGCAACCTAgagtcaccttaaattttcgaactTAAAGGTGGCTCCGAGCACCCTCTGTACGTTCTATAAACTTTgtaatcaaagtgctctatgagcaaacccgTCGATTTCCCAGTGGATGATGATTGACATGTGTGGCTTACGGTTTATTCTAGTTATACGAATTACGTTATTGAACTTCTGGCTATACTTGTTATAGcagcagtctttttttttttttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17936	SNX27; sorting nexin-27	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala