Gene detail

Detailed information of XP_020612560.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2239:1277674...1288899
NR annotation: XP_020612560.1, baculoviral IAP repeat-containing protein 1e-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110050923

ATGTTACTTCACTGGAGAAACACAACAGCTTCGGCTACACTTTATCGTGACCTCTACTATGCTTTGTGTCATCAGGGAGTTGGTCTCAATAACGTGGCCAGAGAATTTTGTGTTACTGATTCAGAAGCATCTGCGGAGGACATTCTTGATGTGAAATCCTGTCGAACTAAACTGGCAGAGCATTACAAGAGAACCGCCACAGTGCCCACCTCTGCCTGGTCTAAAAAATCCCCCGTGGACTTTCACCAGATCTACACTCGACTGTCCTGGGTGAATGAGGAACAAACCCCTGCTGGGTCATCACGGTCTGAACTGGAACGTTACACGGATCTGTTCGCTGCCAACAAGAATGGTGTTGTACCAAAGAGAATACTCGTGCAAGGGCAGACGGGTATTGGGAAGAGCACTTTCGTCAAGAAACTGGCTGTGGACTGGGCTGAACTTGATGACGCGACAACTGGAGACAAACAGAAAGATATCCTGAAGACTTTCGAGCTTTTAGTTGTCGTTAATCTTAAAGAAGTGTCAAAATGCCAAAGTCTCAAGGATGTTATAAGTCGCTCATTTATTTTCGCTCGGGAGGAGAAATATCTTACAGATAGCCTGCTGAATTACATCACCAACAATCAAGACAAGGTTTTGCTGGTGTTTGATGGATATGACGAATATCGCTGCGGAAGCAACTCTGAAATCTACGAGATATTCAGAGGAAACGAACTGAGGAACTGTTGTGTCCTGATAACAACTCGAATTTCCAAAGCTGACGAGCTACGAGCGTTTAAAGACATGCATGCTGAGATCACCGGGTTTAGTGAAGAGGACAGAGAGGCCTTTGTGTGCAGAATGCTTGGTGGCAAAGCAGAAACATTAAAGCTGTTCCGTCATCTTTCGGTGAAACGTCTGAAGGACCTAGCGAGAGTTCCGTTGCTACTTCTTTTCTTTTGCACCTTATGGAAAAAGGGCAAGTCGAAGAGCTTTCCTGAAAACAAAACAAAATTGTATTTGGCGATTGTCCAGTACGTTTTGGATCACAATCAAGGGAAACATTCTCCTGCTCGCTTTGGCAAAGTTCACGATTTCAAAGAGGTCCTCGCAGAAATCGGAAAGGTGGCCTTAGAATGTCTTTTGAAGGACGATCATGTGTTCGAGTATGATCAATTGTCTGATGCCGTTCTTTGTGACGAAAGTCTCATTACTGGCTTGCTTCAAGTTACCGAGTACGCAGAAAATCTTCGACCAGCAGGGAGGGTATCCTTCATCCACAAGAGCATTCAAGAATTTTTGGCAGCGTGGTTCATCTCTTCCAGATGTGTCCCTGAAGGAAATCTCGGTGGAATTGAACAGCACACACGTACCTTGGAGAATTGTAAAGCCTGGGAAAATGTTTTCCAGTTCGTTTGCGGTTTGTCTGACGATGGAGCAGGGAACGTTTTTCAGCACTTAGCATCAGTCAGGATCTCTGATCCAACACTGGATTTATCAAAGACAATACCAGATGTAGGAAGCGAGACAGACGAGCCACTGTGTGACGTCACTGGCAGGCATGAGAGTTTCAGAAACTTGGTTGACGATTCTTTCAAAGAAGTTCAATCAAAAGCTGCACTGGCGAGACATTGGTTGGATTGCTTAGCTGGTGTCATCCTGATTACCCCTACAAGGCCATTTCCTGAACATATACTAAAGATGACAATTCTAAATGAAGATTCTTCCTGTAAAGCTTTATTTTTTCACGATGCTCGTTATTGTCGTTTATTTCGTGGTGATGACAGAGACTGGATGTCAAGGCTATATGGGGTGCTGGAGGTTTTCGATTGCTTACATGTCCCAATGAGAATAACCGAGAACTCTGCTGCTGTCTTGATTGGAGATTTTTTAACGCAGTTCAAGACTGTTGAATGCGAAAGGTGTTGTTTTAATTGTGTCATTCGTGTCCATAATAAGAAAGCTCAGTTTTACGTAACAGGGTTATGGCTGTACTGTGATAACCATGCGAGACTGTTTACTGAGACTATTACCATTTCTACTCCATCTTGCTCCGAAATTTCGTGTTCAAAACAGTCATGTTTGAAATTCTTAAGATCTCTTGACTGTAATGAAATTGTGAACGCGCAGACATTGAAAGATCTTGGTGCAGTTATCAGAAACTGTAAACAATTGAAAACCATTGAATTTGGTAAATGCGGAGAAGGTATGCGTGAACTGCTGGAACAAGTACCAAATCCCAGCACGTGCTATGTGAACATTGGTGGTCCACTGTCACAGGGNGCCAATGAGTGA

Transcript

rna-XM_020756901.1

tgcAGTTTTTACCAGTAGTATTTTATGCTGGCTTGAGGTGTCAGGAataaatttgttgtttcagtGAAAAGAGAGATGATGTTTTTATCACAACTTTCAATTGATATGTAACAAATTGCATCATTGCTTAACGCCAAGCTTCTACTCTTTCTCATACAGTTGCTTTTAAAGAAGGCAAACCTAGTGACCTTGAACTAAATGATCTGGCGGGAAAGATTTGTACAAAGTGGCAGAAGCTGGGACTTCGCCTGAACATTAGTCAGAATGTACTGGACGAAATAAAGACTAATGAAGAAGATAGACCATATGAGATGTTACTTCACTGGAGAAACACAACAGCTTCGGCTACACTTTATCGTGACCTCTACTATGCTTTGTGTCATCAGGGAGTTGGTCTCAATAACGTGGCCAGAGAATTTTGTGTTACTGATTCAGAAGCATCTGCGGAGGACATTCTTGATGTGAAATCCTGTCGAACTAAACTGGCAGAGCATTACAAGAGAACCGCCACAGTGCCCACCTCTGCCTGGTCTAAAAAATCCCCCGTGGACTTTCACCAGATCTACACTCGACTGTCCTGGGTGAATGAGGAACAAACCCCTGCTGGGTCATCACGGTCTGAACTGGAACGTTACACGGATCTGTTCGCTGCCAACAAGAATGGTGTTGTACCAAAGAGAATACTCGTGCAAGGGCAGACGGGTATTGGGAAGAGCACTTTCGTCAAGAAACTGGCTGTGGACTGGGCTGAACTTGATGACGCGACAACTGGAGACAAACAGAAAGATATCCTGAAGACTTTCGAGCTTTTAGTTGTCGTTAATCTTAAAGAAGTGTCAAAATGCCAAAGTCTCAAGGATGTTATAAGTCGCTCATTTATTTTCGCTCGGGAGGAGAAATATCTTACAGATAGCCTGCTGAATTACATCACCAACAATCAAGACAAGGTTTTGCTGGTGTTTGATGGATATGACGAATATCGCTGCGGAAGCAACTCTGAAATCTACGAGATATTCAGAGGAAACGAACTGAGGAACTGTTGTGTCCTGATAACAACTCGAATTTCCAAAGCTGACGAGCTACGAGCGTTTAAAGACATGCATGCTGAGATCACCGGGTTTAGTGAAGAGGACAGAGAGGCCTTTGTGTGCAGAATGCTTGGTGGCAAAGCAGAAACATTAAAGCTGTTCCGTCATCTTTCGGTGAAACGTCTGAAGGACCTAGCGAGAGTTCCGTTGctacttcttttcttttgcaccTTATGGAAAAAGGGCAAGTCGAAGAGctttcctgaaaacaaaacaaaattgtatttgGCGATTGTCCAGTACGTTTTGGATCACAATCAAGGGAAACATTCTCCTGCTCGCTTTGGCAAAGTTCACGATTTCAAAGAGGTCCTCGCAGAAATCGGAaaggtggccttagaatgtctTTTGAAGGACGATCATGTGTTCGAGTATGATCAATTGTCTGATGCCGTTCTTTGTGACGAAAGTCTCATTACTGGCTTGCTTCAAGTTACCGAGTACGCAGAAAATCTTCGACCAGCAGGGAGGGTATCCTTCATCCACAAGAGCATTCAAGAATTTTTGGCAGCGTGGTTCATCTCTTCCAGATGTGTCCCTGAAGGAAATCTCGGTGGAATTGAACAGCACACACGTACCTTGGAGAATTGTAAAGCCtgggaaaatgttttccagTTCGTTTGCGGTTTGTCTGACGATGGAGCAGGGAACGTTTTTCAGCACTTAGCATCAGTCAGGATCTCTGATCCAACACTGGATTTATCAAAGACAATACCAGATGTAGGAAGCGAGACAGACGAGCCACTGTGTGACGTCACTGGCAGGCATGAGAGTTTCAGAAACTTGGTTGACGATTCTTTCAAAGAAGTTCAATCAAAAGCTGCACTGGCGAGACATTGGTTGGATTGCTTAGCTGGTGTCATCCTGATTACCCCTACAAGGCCATTTCCTGAACATATACTAAAGATGACAATTCTAAATGAAGATTCTTCCTGTAAAGCTTTATTTTTTCACGATGCTCGTTATTGTCGTTTATTTCGTGGTGATGACAGAGACTGGATGTCAAGGCTATATGGGGTGCTGGAGGTTTTCGATTGCTTACATGTCCCAATGAGAATAACCGAGAACTCTGCTGCTGTCTTGATTGGAGATTTTTTAACGCAGTTCAAGACTGTTGAATGCGAAAGGTGTTGTTTTAATTGTGTCATTCGTGTCCATAATAAGAAAGCTCAGTTTTACGTAACAGGGTTATGGCTGTACTGTGATAACCATGCGAGACTGTTTACTGAGACTATTACCATTTCTACTCCATCTTGCTCCGAAATTTCGTGTTCAAAACAGTCATGTTTGAAATTCTTAAGATCTCTTGACTGTAATGAAATTGTGAACGCGCAGACATTGAAAGATCTTGGTGCAGTTATCAGAAACtgtaaacaattgaaaaccaTTGAATTTGGTAAATGCGGAGAAGGTATGCGTGAACTGCTGGAACAAGTACCAAATCCCAGCACGTGCTATGTGAACATTGGTGGTCCACTGTCACAGGGNGCCAATGAGTGA

Protein

Uniprot

Uniprot term	Description
Q9QWK5	Baculoviral IAP repeat-containing protein 1a OS=Mus musculus OX=10090 GN=Naip1 PE=2 SV=3
Q9R016	Baculoviral IAP repeat-containing protein 1e OS=Mus musculus OX=10090 GN=Naip5 PE=1 SV=3
C3VPR6	Protein NLRC5 OS=Mus musculus OX=10090 GN=Nlrc5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46312	NACHT DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12800	NLRP3, PYPAF1; NACHT, LRR and PYD domains-containing protein 3	-	Pattern recognition receptors	ko04054	deepkoala