Gene detail

Detailed information of XP_020612596.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2239:1507898...1517468
NR annotation: XP_020612596.1, uncharacterized protein LOC110050956 isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110050956

ATGTCGCGCGCTTTGCTGCCAATGACGTCAAAGGTCGACAAGTTGTCAATGGATACGAGTCAGTTGCTCGTGACAACAACACGATTTTTACGTTTAAACTTGGTGACCAAACTTTCGTCCCGCCGAACTCAACTGATAATCGTGGTAACTATGGTTGATACTGCAAGGCTCAGGTCGGTAAATAGCATTAATGATGCGGGTTACCTAAATGAAGTGGATATTGTATCCAAAAATCCAGATCGAAATAGAGAAGCAAGAGATTTTCCTGTCAATCCAACTTCTGCACTAACTTTGTTCAGCGAAAAATATCCGGAAATTGCACCAACTTTGAGGACAACTAAGGATCATTATCACGCTTTGAAGGAAGCCCAAAACCATGGCAATCTGATTTCACTGGCAGCATTCCAACATGTTAAAGGCTTGTACAATGTTTACATCCTAGATAAGAGTCCGAAGAATAGATTTGCACTGACAGAATTTGCGGTAACTTTGGGGATTCCCAAGCTTGCTTATGAAATAATTGTTGACAGCAGAACTAAATGCCAAGACCTAACCACATGGGACAGAGAAAAGGATGCAGAGGGAAGCAAGGGTGATTTGGGTTTGAGAGCTGAGGAGCAGGAGTCTGAACAAGACAAAGCAAAGACCGATGCTCTAAAAATGTCACAGGATATCATTTCTCGGTTAATCGCTGTACTTCTAAATTTCACTGATGTCCATGATCCATTTTGCTTGGCTTGCAATGAAGCTGGTATGGTGCACCTTTTTGTTGAAATGATTAAAGAACTCCAGGACACAATTCCACACAACTTAAAATTTGTGAATGCCCAAACACAGCACCAAACTAGATTCACGGTGCGTGGCAAGGTACTATCTCGGACCTTGGGCACCCTTCATAACTTATCAAAACGTGTGCCAACGAGGAGGAACTTTGCCGCTTGTCATGCAGTGAATGTGCTCGTACCTTTGCTCAAAGCAGAAGTTGCACTTTACAGTGCTAAAAGTCTGCTTATTCTGGCCTACTTGATTGACGAAGAGAACAATTATTTGATCATGGCTGATGAAGGTCCAATAAAGTTTCTCACAAGCTTGCTGGAAAGATCGCTGAATACTTTAAGCCATAGATATATAGGCTTCTCTTCCTCTGAACTTGCTGAAGGTCTGACGCAAATTGCAGTCAATGACAGCAACAAGAAAACGATTGCTCAATGTGGAGCTATTCCTATCATTGTCAAAATGTTGCAAAGTGCACAAGACGATGAGGAGAAATTCAACGCCTGTAATACACTGTGGACCCTGGCTTTTGATGAGGAAAACAGAAAACAAATCAAGGGTGATACAGTTGCTATTCCTGAGCTAAAGAAACTTCTAACGTCAGAGAACAGTGAGATAAAGAAAGCTGCTGCTGGTGCATTATGGGAATGCGAAGGCAAAGAGAAACACGCAGAGGAGAAACAACAGTCAGTTAAAATACAAGAAGCAACAGGTGCGCATGTGCAAGACACCAAGCACGTAATGATAAGTTACCAGTGGGATGTTCAAACACTTGTGATTCAGTTAAAAAACAAGCTACAGGCGGACGGCTACAAGGTTTGGATGGACATTGATGAGATGGGCGGCTCTACACTGGAGAGCATGGCCAAGGCTGTGGAAAATGCCAGCGTCGTGTTGGTCTGTGTGTCTCAGAAATACAAAGAGAGCCCCAACTGCCGGTCAGAAGCAGAGTACACATTCCAGCTGCATAAAGACATCATTCCATTGATGATGGAAAATAAATACAGACCTGACGGATGGCTTGGCTTTATAATGGGCTCCAAATTCTGGATTGACTTCAGCGAAAAACATAAACTAGACTTGAACGCCAACAAGCTAGTAAAGGAACTGGGAAACAGAGGGAAAATAGCAGTCCAGGAAAGTATTGTTCAAGCCGTACTAGAAGATGTTGTCGATGCCTCGCCCCAGTCTTCCATCAGATCCTGGACACTCGGTGATGTCAAAAGTTGGATCAACGATGTGGGATTGGAAGAGAGGTTGAATGGAAAAGCTGTTGAAAGGCTGGATGGTCGGATGTTGTTGCGACTGCAAGATCTCAGAAAGGAGGTAAATTATGTTTATTTTTAA

Transcript

rna-XM_020756937.1

ATATCGATCACAGCCGTTAACAGCTGTGCGTTGGTCGCAtgtcgcgcgctttgctgccaatgacgtcaaaggtcGACAAGTTGTCAATGGATACGAgtcagttgctcgtgacaacaacacgatttttacgtttaaacttggtgaccaaactttcgtcccgccgaactcaactgataatcgtggTAACTATGGTTGATACTGCAAGGCTCAGGTCGGTAAATAGCATTAATGATGCGGGTTACCTAAATGAAGTGGATATTGTATCCAAAAATCCAGATCGAAATAGAGAAGCAAGAGATTTTCCTGTCAATCCAACTTCTGCACTAACTTTGTTCAGCGAAAAATATCCGGAAATTGCACCAACTTTGAGGACAACTAAGGATCATTATCACGCTTTGAAGGAAGCCCAAAACCATGGCAATCTGATTTCACTGGCAGCATTCCAACATGTTAAAGGCTTGTACAATGTTTACATCCTAGATAAGAGTCCGAAGAATAGATTTGCACTGACAGAATTTGCGGTAACTTTGGGGATTCCCAAGCTTGCTTatgaaataattgttgacaGCAGAACTAAATGCCAAGACCTAACCACATGGGACAGAGAAAAGGATGCAGAGGGAAGCAAGGGTGATTTGGGTTTGAGAGCTGAGGAGCAGGAGTCTGAACAAGACAAAGCAAAGACCGATGCTCTAAAAATGTCACAGGATATCATTTCTCGGTTAATCGCTGTACTTCTAAATTTCACTGATGTCCATGATCCattttgcttggcttgcaatgAAGCTGGTATGGTGCACCTTTTTGTTGAAATGATTAAAGAACTCCAGGACACAATTCCACACAACTTAAAATTTGTGAATGCCCAAACACAGCACCAAACTAGATTCACGGTGCGTGGCAAGGTACTATCTCGGACCTTGGGCACCCTTCATAACTTATCAAAACGTGTGCCAACGAGGAGGAACTTTGCCGCTTGTCATGCAGTGAATGTGCTCGTACCTTTGCTCAAAGCAGAAGTTGCACTTTACAGTGCTAAAAGTCTGCTTATTCTGGCCTACTTGATTGACGAAGAGAACAATTATTTGATCATGGCTGATGAAGGTCCAATAAAGTTTCTCACAAGCTTGCTGGAAAGATCGCTGAATACTTTAAGCCATAGATATATAGGCTTCTCTTCCTCTGAACTTGCTGAAGGTCTGACGCAAATTGCAGTCAATGACAGCAACAAGAAAACGATTGCTCAATGTGGAGCTATTCCTATCATTGTCAAAATGTTGCAAAGTGCACAAGACGATGAGGAGAAATTCAACGCCTGTAATACACTGTGGACCCTGGCTTTTGATgaggaaaacagaaaacaaatcaagGGTGATACAGTTGCTATTCCTGAGCTAAAGAAACTTCTAACGTCAGAGAACAGTGAGATAAAGAAAGCTGCTGCTGGTGCATTATGGGAATGCGAAGGCAAAGAGAAACACGCAGAGGAGAAACAACAGTCAGTTAAAATACAAGAAGCAACAGGTGCGCATGTGCAAGACACCAAGCACGTAATGATAAGTTACCAGTGGGATGTTCAAACACTTgtgattcagttaaaaaacaaGCTACAGGCGGACGGCTACAAGGTTTGGATGGACATTGATGAGATGGGCGGCTCTACACTGGAGAGCATGGCCAAGGCTGTGGAAAATGCCAGCGTCGTGTTGGTCTGTGTGTCTCAGAAATACAAAGAGAGCCCCAACTGCCGGTCAGAAGCAGAGTACACATTCCAGCTGCATAAAGACATCATTCCATTGATGATGGAAAATAAATACAGACCTGACGGATGGCTTGGCTTTATAATGGGCTCCAAATTCTGGATTGACTTCAGCGAAAAACATAAACTAGACTTGAACGCCAACAAGCTAGTAAAGGAACTGGGAAACAGAGGGAAAATAGCAGTCCAGGAAAGTATTGTTCAAGCCGTACTAGAAGATGTTGTCGATGCCTCGCCCCAGTCTTCCATCAGATCCTGGACACTCGGTGATGTCAAAAGTTGGATCAACGATGTGGGATTGGAAGAGAGGTTGAatggaaaagctgttgaaaGGCTGGATGGTCGGATGTTGTTGCGACTGCAAGATCTCAGAAAGGAggtaaattatgtttatttttaaaatataactgAATTGGCGGCAGTTTGATTGTTGAGAACGATCCTACAAATAAAAATCACTCGTTAATTGACTATTACGTGCCAGCGCAGACGTTTTTCCGCTGGTCAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225	Repeat	Armadillo	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46270	ARMADILLO-TYPE FOLD-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan