Gene detail

Detailed information of XP_020612782.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2259:2051027...2056030
NR annotation: XP_020612782.1, D-arabinitol dehydrogenase 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020757123.1

ggggggggttgggtggtttcaaaccaaaaaaattctGCTCTAGCGGGAATATGCATATGGAACAAAACATCACAACTAATTCAGGTGATGATAGACGACCATGTTGTGAAATCATCCTTAACAATCTTGGCATTGCACTAATTTTATAGGGTGGAGGCAGTGAGAAGACAGTAGAGTCTTTAAAAGGCTTGTATTCTGAACAATCATGAGTTAAAAAGATGAGTTATGTAGTTTTTATTCACAAATGTGCTCCCAACAGAGAACGttactcccatgtgaaaaggtcgggaatgCTTTTTCAGAAGTTAGAAAGGGAGACCAATGCAGGCGTGGCTCAAGTTTTATTTGACCTCTAAAGGATACTACTCTGAACAGAAAGAgcagatttttattatttctttgcagGCAACTGTTAAAGATGACTTGATGGCAAAAAATAGTCGCTGTGGCATTTCATCCTGAACACCTTAAGTGAGACCAAAACCTTTGATTTACACCCCTGAGCGAGAtgatgagcatccccgacctattcacatgggagtcccccgcCACTGGAAATGTGTAtgagaaggaaaataaaatttagttatAGTTTTGCTTTGTGAAGTTAAGTGTACGTAAAATTCTGTTGGCCAATAATGAATGTTTGAGATTAAAAGTGGTGACTTTTGTTCATGGGTCAAGCACCCCCTCCTCTCCCCTGCCTCCCCAGGGTTGGAGCAAGCTGAGCATGTTGAGGGGAGGAAGCTCTCACAAGGGAGCACTTTGACTTCTTCCCCAGAATACAGTCAGCGTGCTTCAGTTGCCAATTTTTTAGccttcaaacaaacaaaaaaagcctGGACTAAATTCTTGCTCCAATGCACCTGAAGCTTATTTCATGTGATCTGCTCTGAGGTACTACGAGTGAGCAGTAAAAGGGGAGCGGAAATTTCACGATACAAAATCcttttgaacactattttgCTGTGCTATTGTTTTCAAGGTAAAATCTgatctcatttcatttcttttctaagTTTGAATGATATTCTCCTTGTTTCCCTACTCCCCCATCGTCGTTACCTTACTGATGATCCCCCACTACCACCCGGTAAGTAAAAATATCTCGCCCCAGTTTCCAACGTTCCATGCATGCAGTTTACACACTGTCGTGCAGAGACGAAGGTTTGGTGCTtgttattttccaattttttgcGTGTTACTCGACACCGAACCATGAATAACGCGCTACAGTTATGGGATGGACATCTGTCTGTGATAACCCGACCAGTGCCTCACGTTCAGGCCTCTCTGGACGTTGTTGTGAAAATCACTTATTCGGCGGTATGTGGGACGGATCTGAAGATTCTCGAAGGAAAGTTTCATTGTGAAAAATCTGTTATAATGGGCCACGAGTTCGTCGGTATTGTCAAAGAAGCGGGAGCTGACGTGAAGCATGTGTCTGTTGGCGATCGTGTCGTCATTAACCCTAACACCAGCTGTGGAATGTGTGATAACTGTACCAAAGGAGTGCCACATTTCTGCAAATTTGAAGGTGTGAAAGGCACTATTGGTATCAGGCGTAATGGAGGATGGGCACAGTATTGCCGTCTGCCAGCCAAGAATGTTGTTCCTTTACCCCATCAGCTGTCATTTGAACTTGGCTTGTTACTGGAACCAATGTCATGTGTTGTACATGGCTGGAATCTTTTACAGCCGATCTCTCCTGATTCAGAGATCTTAATTTGTGGAGCTGGAAGCATGGGTCTTCTGTTCATGTGTTTGTTACACTTCAGGGGTTACAGAGAAGTTGTTGTGACTGAGCTGTTAAAAGGTCGTCAGAAAATTGCACAGAAGCTTGACTTTGGTTTTCAAGTAGTACATCCTGAAATTTTAGTTTCGGAAGCTAGAAATGCAAAGCACGATGGTGATGAAGACTGGGGTTTTGACATTGTCATCGACTGCTCTGGGGATCCAAAGACCCTTGAACAAGGGGTTCAGTGGTTACGTCAAGGAGGAAAATTTCTTCTGTTTGGAATTTCACCTGCAGGATCCGAAGCAAAAATTGATCCACATGAAGTTTATGCCAAGGAACTGAAGATCATAGCATCCAGGATTAATCCTTTTACCTTCTCCTCATCTATGCAGATAATACAGGATATGGGAGAACGGTACTTGAGTTTTGGGAGGTTAGGTATGCGCACTTTTCAACTCCAGGAATTTACAGCAGCTTTGGAAGTCCAACGTAGtggagaaatttcaaaagctGTCTTTGAAAATTAAGTGTTGGTGAAATGAGTTTTCCAATTTCCTTCAGCAGGAGCTCAATGCAAACCATTGTGCAATATGTATCTCGCTCTCTTTCCCATCAAATCATTTTAAGTTAAAGTGTAATATTCAGGAGGTCATCTACTTCTAAACATCAGgtctgggttgtttgaaaggtggatgatgctatccaccagacaaatcactatccagtggattgCATGGTTTGGTTTGTTAACACTTGGTAacactggatagcaatttatctggtGGGCAGCGTTATTCAGTCTTCAAACAACAGGGGCCAGTATGGCGTCAGTGTAGCAGCAGAATTCTCAGTGTAGCTTTTCTGTCCCTCTCTCCTAGATTATTAAAAACGAAAACTGAGAATGGAACAGTGTTatcacgttttcaaatttatcagaAGCCTTACGACTAACATATCACAGGGAATGAAGAGGATTAGTGAGTGTAATTAAAATGTAACATATACAGCTGTATTCTTTCTGAAAGGCAATCAGCCAAGGCTTTCCCAGTAGAATTAGTTCATGCTTTGAGCTGTCCATATATTGGGTTATAATGCTCTTAGCAACATGAAAAGTACTcgagaagctagagttgctctagGCATAAACACTTATGCTCCTCTTGTCTCCAAACTCTCCTATGTATAACTGGATGAAGCTACACTaaacatgaaccaattcttaaatcATATTCAGGGATGTtgctaaagaaagaaaaacaaacaaaaaaagaaatactggCTGGCTTTTTAACAAACTGAGCCAGCTTTTTTCACCTTGACACCTTGAAAGTCACCCaaagtctttgttttgtagtcaaACTTCCTCAGCCCATGATGAGCTCTCTTCAGTTAAAATTAGCAGCAATAGGTTCTCAGCTACATCCCTGTATATTACTACATTAATAATGAAAATagtaacaaaacagaaaatattgctttgtatatttttattcgTCTGCAAGTTCAGAGTACACTGCTCTAGGTTTTatctaagaaattaaaaaatatatatacaggaCTTTCAACATAGttgtgataaattaaaaaattggcAAAGGTCAACAATATCAAATTGTACAATAACATCATAAGGCTTAAATAACAAAAGGTGCTTAATATTGTACATTATTGAGAAAAGACCATGTACACCCATTAAAGAAAGCTTGCTggattttgcaaaaaaaca

Protein

Uniprot

Uniprot term	Description
Q7NXH5	L-threonine 3-dehydrogenase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK) OX=243365 GN=tdh PE=3 SV=1
Q5WYJ7	L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Lens) OX=297245 GN=tdh PE=3 SV=1
B2JPU0	L-threonine 3-dehydrogenase OS=Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815) OX=391038 GN=tdh PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00107	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan
PF08240	ADH_N	Alcohol dehydrogenase GroES-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011032	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR013149	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan
IPR002328	Conserved_site	Alcohol dehydrogenase, zinc-type, conserved site	Interproscan
IPR050129	Family	Zinc-containing alcohol dehydrogenase	Interproscan
IPR013154	Domain	Alcohol dehydrogenase-like, N-terminal	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43401	L-THREONINE 3-DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17818	ARD1; D-arabinitol dehydrogenase (NADP+)	EC:1.1.1.287	Pentose and glucuronate interconversions	ko00040	deepkoala