Gene detail

Detailed information of XP_020613106.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2273:519227...526369
NR annotation: XP_020613106.1, phosphatidylcholine transfer protein-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020757447.1

CTTGCACGTGGTGAAGATTTTTTAATAGAGTCCAAATTtactgaaatttgaaataatctaTCACCTGCCCTTTCAATGCAGGTGGGAAAGCTTTGACGGAGGCGAATGTTATAAAAGATTACGAAATAAATTCTTCTTATGCGATATTGAAGTACAGGTGACACAGGACCCTGGAATATTCCCCGGAAGGCGAATAAGCGGGAACGTGGAGAATTAGGAACTACACGCACgttgtaagtttctttttcttttttcagcccGCCtaaagttttagtttgtttcagGTGGCTGTCAAAAGACACCAATTAAAGTATTAAATCAATGGGATTTGAGGACAGAAAATTCTTAGAAGCTGCTCAAGAAATTGACAACATAAAGCTGGATGGATATGAGTTCTTTACAGAGTCTGTTAAGGAATCTGTGGAGTGTAAAATCTATAGAAAACATGTAGAGACTTCAGGGTTATACGAGTATAAAATAATGGGATCACTGGAAGATGTTGGTCCTGATGTGTGTAAGCAAGTTTATATGGACTTAGAATACAGAAAGAAATGGGACGAGTATGTTAAGGAACTTTATGAATGTGATGATGAAGGAGTCCAAAGTATTTATTGGAATGTAAACTATCCTTGGCCTATGTCAAACAGAGATTACATATACAAAAGAGCTTTGCGTGAACTGGAGGTAAATGGCATTCCGACTGTAGTTGTGTTAGCTGAGAGCAATACAGCTTGCCACTTGCTCTTTCTGAAAAGGCTGAAAACCATCATGTTCCTTTCAACACTCTCACtccactctttttttatttcagcatTTATGCATTGTTTTGATAACCCAGGCGGTCTTATACCAACATGGCTCATCAATTGGGCTACAAAGaCTGGAGTGCCATCATTCATGAACTCAATGAGAAGTGCCTGTTTAGGTTATGAAGAATATATATCATCAAAGACGACATAACTACAGTGTAAAAAGCTTTAAAGAACagacaacatttttaaaaatttagttAATGGTTTGAACACAGTGCTAAGAATCAGTGGTTTGCCTGGTGTGATCACCCAGGTAAATAATAAGGTCCTGAAAAGGATTGTTgctggtacatgtatttgacaCTACTAGCTACTGGAAAACCTGCCTCTGAAGCTCAGGAGATTGAAACGTCGTTCACTGGCAAACATcaacaacatttcttttcaggaCTAACCTCTGTACTTGGGCAATCACACTCCACAAACTAATATTccaaattataaatatttacaacacAGTATGCAGGTAcacaattattttaatattctgATTGCTCTGTTTGACTTTCTGGGTGGAAGACGTGTTCTCTATAATAAAGTACAGTGGAGccctgttaatctggtcaccaacagaCCACAAAAATATGGCTGTATTAACAcggtggctgtattaatggggctatttgaataagaaaatcactgactgagcttttgtttctGCCAGAATAAGGAGGcagtattaatggggtggctgcATAATTTAATGGGTGGCCTTAAGACAGAGTTCTACTGTATACGGACTTCACATAACTAGAAATCTTTAGGGTTGTTTCAACAGTATGAGGAAACTGCATTACAGCTTCCTCCCCAGACAAACACAGTCTCTTTGGGAGCATGTGACTCAAGGAGAATGCTGAAATTCACGATACAGTGTATTTACAAACATTGTCAACTAATGTTTACAATCTGCCGCAAGTGTTTTATTTCTGAtatcatacatgtaattcataTTTACATGAGCCTTATTTCAGCcttatttgtataattttacaaGACAAAGTCATCAACTGATTTTCATTGTCCACATCAATAATTCCAAGCAAGAGCGGGCCAGCTGAGGTAAAAACACTGTTAAGAGATTGCCTGTTCCATGACAGGACTACAAATGTAATAACAGAATTACAGTTGGTGTAAATATCAATATTTATGTGGCTAGTAAATTATGAAGATGATAAGTACAAAACGTAtgccaagaaaataaatttggtGTTTCAGATTCTA

Protein

Uniprot

Uniprot term	Description
P53809	Phosphatidylcholine transfer protein OS=Rattus norvegicus OX=10116 GN=Pctp PE=2 SV=2
Q9UKL6	Phosphatidylcholine transfer protein OS=Homo sapiens OX=9606 GN=PCTP PE=1 SV=1
P53808	Phosphatidylcholine transfer protein OS=Mus musculus OX=10090 GN=Pctp PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01852	START	START domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002913	Domain	START domain	Interproscan
IPR051213	Family	START domain-containing lipid transfer	Interproscan
IPR023393	Homologous_superfamily	START-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19308	PHOSPHATIDYLCHOLINE TRANSFER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008289	Molecular Function	lipid binding	Interproscan
GO:0008525	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0031210	Molecular Function	phosphatidylcholine binding	Interproscan