Gene detail

Detailed information of XP_020613954.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_23:1161871...1175777
NR annotation: XP_020613954.1, mucin-3A-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110052166

ATGCGAACTATGAAGCTGCTTCTGCAAGACAAGAAGCTATGGCAGAAATTCAGAGAGCATCAGACAGAAATGATGATAACAAATTCTGGAAGGCGTATGTGCCCATTAATGTCAATAGCGTTTGAAGACCTCAAGCCCAGGCGATTCTACGCCGTGATGGTAGACTTCGTCTTGATGGACGCGTTTAGATACAGCTATGATGTGACCTGTAATCGCTGGGAGGCAAACGCCCGCCCTTTACCCGAGGAAAACTGGCCGAGACTTTACGTTCACCCGAGCACGCCAGCGACGGGGGCGTCTCTCATGCAGAACGTGCTCACCTTTAAAATGCTGAAGTTAACAAACTGCCCTGTGACGGCGGCAAACTCAACCCAGGCAATTCTGTTGAGTACAATGCGTCGTTACATTCCTCGCATTCAAGTGGTTGAAAGTGCTGATGGAGTTTATTTTGACTACAACTTGAGGAAGGAGTTTTATTTCCCCGAGACGGAGTTCATGGCCGTTTCACAATACAGAAATAAGCAGATTGCCCAGTTAAAGATTGACGCCAATCCTTTTGCAAAAGCTTTCAGAAGTGATGGACTGCATGGCAAGGCTAAACGGCGTCGTATGGAAACCATGAGCGCTTGTGAATATTGGAAAATTCCAGAATATGGTCCATCATCAGACTGTTCAAATATGGAGGACTCTCTTGTCAACAGTGACGAGCCAGACGTGGAAAATAACTCCTCTTCGAATGAACTCGCCGATGAATTCTCACCTGAAGAAAGCTTCAATTGCGACGAACGACAAGTGAATGGAACACGTAAAAATTCAGCGAGTCAGACAGGATTGTGCAAAGACGTTTTGGACGTACATAACAAGATTCAAAATGGAACGAGCAATGAGGAAATCCTGTCAATTGTGTCACAAGCTACGCAACATCAGTCCACAAATCCACCCGGCGAAAATGACTCACATTTAATGTGTGAAGAGTCTGCAGAATGGATGTGGGGGTTTGACGAGCAAATGTCATTCAGATACGCTTCCAATGGCCAACTGGAAGGCCTCTTCAAGTATGGAGACAGCCCTAAGGATTCCTCGAAGAATTCCATTGATGTGGGCGAGGTTACGAAAGCTACGGTCAACAGGAGGAAAAAATATCTCCCGAGGAGGCTGCAAAGAACGGTGGATTCAACGTTAACAAACGTGAGTTCAGAAGAAATACTGGAGTTAGAGCACGCGGATAGACCTGCTGTTGACCAAGTAGATTTGCCGCCGCTACAACCGAGTGACAAAACATCCATCTCTGCTAATGACGGGAAAGCAGAACAGTCCTGCAGTACAGACGAGCAGACGACACGATCGACTCCCTCGCCGTGTTTTGAACCTGTTGCAAAGCCATCCATTAGCTGTAAAACCCCACTTCATCCACAAAAGACAAATTCCCATACCGACGCCATGCATGCGTCTGGCGAGTCACTGGCTACTCCTGCTAATTCTATGCTGTCGACGGTTACTCCTGGACCAGGGACCACAACCGGTTCTTCTCTAACAGCTCTGATGCAGATGTGTTCAGACGCTGAGTCAGGTTTGGACAGCCGAAGGTCAATGCGACAACGGAGAACGGCGACAAACGACACCTCCAAGAAATTGGAGATGCCAGGCACACCTGGTAGGAAGGGTATTTTTCCAGGAGAACTTTCAGAAGCCAGGATGTCTACGTCAAAAGAATACGCGGGACCAGTAACCCCCCAAGACTGTGATTCTTCGTTTAAACGACAAGTGGAATCTGCGGCATCTTCCTATGGTCAGCTTTCTCAGCAGTCAGATCACAACTACTCACTTCCACTGACTTCTGAGGGCGAAGAACGGGCCAGACCGTGCCTTATTCCAACATCCTCTGCATTCATTGGACACGTAACATCATCGGGCATAAATGCAACCCCTCCTGCGTTTAACAACTACAACAGTAACAGCAGTAGCACCAGCATGAATTCGTTTGTACACGTAACATCATCGGACATAACTGCAACGTCTCCTGTGTTCAGTAACTACAGCAGCAGCAGCAGCGGCAGTCACAGCATAAATTCGTTCGTAAGCGCAACATCATCGAACATCAATGCAACGCCTCCTGCGTTTAAAAACAGCAGTAACAGTGGAAGTCACAGCATGAATTCGTTTGTCAGACGCGCAACATCATCCGACATAACTGCAACTTGTCCTGTGCTCACCAACTACAACAGCCACAGCATGAATTCGTTTGTACACACCACATCATCGGACATAACTGCAACGCCTCCTGCGGTCAGCAACCACAGCAGCAGCGACAGTCACAGCATGAATTCGTTTGTACACGCCACATCATCGGACATAACTGCAAGGCCTCCTGTGTTCAACACCTGCAGCAACAGCAATACTAACAGCATGAATTCTCTTGTAAGCAATAGTGTAAGCACGTCACCGACAACTACCTATTCGAGGGCATACCCTTATATCGAAGAGCCCTCTCCAATGATTGTGGACAAATTTTCCGGTTATTATATTGTGAATGGGCACACCAGCGGACAACTTCAACAAAATAAACAACAAGGATACAGGCCTATTGTTCCCGCTCCCAACCAATCAGTAAACGTCTGCTCTGATGAGCCCGCGAGTGATCCTTCACTTACTAGCAGTTGTAGTAGCAACAATATTCCCTTTCCCATAATAATCGACAGTTTCTCCATCAACGAAAATTTTCGAGCCGCTGTTGAGCATCGAAGCTTCAAGTATAAGATTTTAGAGTCACAAAGGCAAGCAAATCCTGTTTCCAATTTAATGCCACAACAAACTTCACCACCACCGCCACAAGTCAACCGAGGTCATTTCTCATCACCCTACCTGAATCAAACTGGTCAGTCTGGTTATATCGCTCTTGATAACACTGTTCTCATGAGAGCGTTTCCCCTCGAAAAATTCTACTCGTTTTCTGCACCGGCCGAACAACTACCACAGCCTCCTTCCGTTCGACCTCTCACCCGCTGCTACAAGACGACGCGGACGAACTTCAGCCGCATGAGCCTGGAACCTATCTGCAGTGTGATTCATCCGAGGATCGATTTAACATCTCAGAAATCCGCTACTGAAGTTGCAAATCAAAGGGCGTGGGTTTGGGGAATTTGA

Transcript

rna-XM_020758295.1

tcgattgaccgaaatttatttttcttcaaactaaaactactcatttttagacgatgatgacagcTGTGAATGAGGTCAACAACGAGAAAACAAAGGTACgggataaatttatttttcgtagtgtttcgcttgtttattttactgccgaacttgatgtgtaaattgattcacaatcggtgtaagcttacatgtaagcttgttATTAAAACTACAGCTGTATgcgtgtatgcaaacgaacagtctgttttagtcgttattctgtgtttcacctctgaaaattatacttaaacaattattcgcctcggacgcggtgaatattcaccaatgttcacctcgCCTTCGGCGGATAATTGTTAGCGCGCGCACTTGATGTATGGCGTAGCGTGACGTTGCGACATGAATTTCGTGCGCAATAAGGATGCGCAAAAACAAATTGTGAGCCGTCATTCTCTCCAGCGATATAATAAATTTCAGTCTTCTGAGTCAAAGCTCATTTCAGAATCAGACGAACTAGAAGACATTGTTAGTAAAAACAGAAATCGGTCGACTGCGGAGTCCCAGCGAAAGAAATTGTGCTGTAAAAAGGCTTCTACACTCGGACAAAGTAAAAGACCTGAGTGAGACAGCCCAAGCATTCGTTCTGGATTTAACGTCACAGCTTTAACTCTCCCCAGACCAAAATCGTAAAATTTTTGCGGCAAATTACTCCACAAAATAAGCTGTattattttagcgaaaaaaaattttgggggttaggtgcactttaaccccagccaaacgatcgcaacatttcaacgcaacatatcgcaacattgttgacCATGGCCCCGGGACCTGTATGATACCTGTGAAAGCCTGACATGAACCGTTAACTGGTTGGCCAAGAGGCAAGTCTAGAGGGCCAATAAACCTCTCAGACTCAAACCCCGACCGCAGAAACCGAAATAACTGCAACTTTACCCTAGGATGTAATGGCTGACTAGCCAGAGGACCATGATGATATCTCGTTCTAAGTCCAGATCTCCTGTTATAAGTGGAGATAGAAGCCGAAATCTGATCTCGTTTTGCCAGTCGAGATCTCGCGTTAGAATTTATAGACATCACTATTCTATCAATTAAATTGATAGAAAAAATTCCGGTcgaaaagggaaaagaaaataataatacagcTGACATAATACAGTTCTAAAACAGACGTTTATAAGACCTGTAGTGATGCTAATAGCGATAAAGACTTGTCATCAAACGCTATTATCTGTTAGGGAGGTTTTGTTAAGACTTAATGCAGATCATATATCTGAACCAACAACACAGTAAGATAccttgataaaaaaatatttgcgtCGCCCCTCTACCCCAGCACAGTCACATCTATCACAAGAACAGAtctatttgaactgcggagaaacatatgagacatgattgatcatagCAGTTATACACACACTGTGAAATTTTAAAGCTGAAAACATTCAGGCTTGAACTTAATTCGAagccatgacctctgcgataccggtgtagtgctcaagcaactgagctatcaaaccaaCAGTCTAGCGTGCTTTGATGTTTCTGTAAAACGTATGCTTGGGAAGCTTTGACAGCTGTTCTCCTGATACGATCTGATACTAACGATATAGTAATTTCGTTGATATAGTAATTTCGATCCAATTTTACTTACCTAAAGTCTTTTTTAACAACATATGTTGCTGCCTGGCATTTAGCATTGAGTTTGCCGTGTAAACGATGTACTACTACCGGCATTTTACTTACCCGTTGGAAGAGTTTTGTTTACTGTTATGCGACTGACATGCTTTGTCCTGTTTGCCGGTGAAAAATATTCCCAGCCGACGCAAGACATTTTATCACAAATGCGATTGGCCGGGTTTATGTCAACAGGCCAAAGAAGGCGACATCACAGATGTCTCGTGTAGTGAGTGACTTTTCCGGAAGCTGTCAAAAAGACGTCGCACCTCGCTATTGTTCTCAGGCACAAGCTGTGTTATTTAATACCAATGCACTCAGTGCACATGTGATCTCGCTTCTGATCGAGCGCGCAGCTAGTGAGTGTTCAGTTGTCATTTCATCACAGGTTTCGTCGGATTTGCGTTGTCCCGTTAGCCTAGCTTTAGCAGACTTCTTCAAATGCGAACTATGAAGCTGCTTCTGCAAGACAAGAAGCTATGGCAGAAATTCAGAGAGCATCAGACAGAAATGATGATAACAAATTCTGGAAGGCGTATGTGCCCATTAATGTCAATAGCGTTTGAAGACCTCAAGCCCAGGCGATTCTACGCCGTGATGGTAGACTTCGTCTTGATGGACGCGTTTAGATACAGCTATGATGTGACCTGTAATCGCTGGGAGGCAAACGCCCGCCCTTTACCCGAGGAAAACTGGCCGAGACTTTACGTTCACCCGAGCACGCCAGCGACGGGGGCGTCTCTCATGCAGAACGTGCTCACCTTTAAAATGCTGAAGTTAACAAACTGCCCTGTGACGGCGGCAAACTCAACCCAGGCAATTCTGTTGAGTACAATGCGTCGTTACATTCCTCGCATTCAAGTGGTTGAAAGTGCTGATGGAGTTTATTTTGACTACAACTTGAGGAAGGAGTTTTATTTCCCCGAGACGGAGTTCATGGCCGTTTCACAATACAGAAATAAGCAGATTGCCCAGTTAAAGATTGACGCCAATCCTTTTGCAAAAGCTTTCAGAAGTGATGGACTGCATGGCAAGGCTAAACGGCGTCGTATGGAAACCATGAGCGCTTGTGAATATTGGAAAATTCCAGAATATGGTCCATCATCAGACTGTTCAAATATGGAGGACTCTCTTGTCAACAGTGACGAGCCAGACGTGGAAAATAACTCCTCTTCGAATGAACTCGCCGATGAATTCTCACCTGAAGAAAGCTTCAATTGCGACGAACGACAAGTGAATGGAACACGTAAAAATTCAGCGAGTCAGACAGGATTGTGCAAAGACGTTTTGGACGTACATAACAAGATTCAAAATGGAACGAGCAATGAGGAAATCCTGTCAATTGTGTCACAAGCTACGCAACATCAGTCCACAAATCCACCCGGCGAAAATGACTCACATTTAATGTGTGAAGAGTCTGCAGAATGGATGTGGGGGTTTGACGAGCAAATGTCATTCAGATACGCTTCCAATGGCCAACTGGAAGGCCTCTTCAAGTATGGAGACAGCCCTAAGGATTCCTCGAAGAATTCCATTGATGTGGGCGAGGTTACGAAAGCTACGGTCAACAGGAGGAAAAAATATCTCCCGAGGAGGCTGCAAAGAACGGTGGATTCAACGTTAACAAACGTGAGTTCAGAAGAAATACTGGAGTTAGAGCACGCGGATAGACCTGCTGTTGACCAAGTAGATTTGCCGCCGCTACAACCGAGTGACAAAACATCCATCTCTGCTAATGACGGGAAAGCAGAACAGTCCTGCAGTACAGACGAGCAGACGACACGATCGACTCCCTCGCCGTGTTTTGAACCTGTTGCAAAGCCATCCATTAGCTGTAAAACCCCACTTCATCCACAAAAGACAAATTCCCATACCGACGCCATGCATGCGTCTGGCGAGTCACTGGCTACTCCTGCTAATTCTATGCTGTCGACGGTTACTCCTGGACCAGGGACCACAACCGGTTCTTCTCTAACAGCTCTGATGCAGATGTGTTCAGACGCTGAGTCAGGTTTGGACAGCCGAAGGTCAATGCGACAACGGAGAACGGCGACAAACGACACCTCCAAGAAATTGGAGATGCCAGGCACACCTGGTAGGAAGGGTATTTTTCCAGGAGAACTTTCAGAAGCCAGGATGTCTACGTCAAAAGAATACGCGGGACCAGTAACCCCCCAAGACTGTGATTCTTCGTTTAAACGACAAGTGGAATCTGCGGCATCTTCCTATGGTCAGCTTTCTCAGCAGTCAGATCACAACTACTCACTTCCACTGACTTCTGAGGGCGAAGAACGGGCCAGACCGTGCCTTATTCCAACATCCTCTGCATTCATTGGACACGTAACATCATCGGGCATAAATGCAACCCCTCCTGCGTTTAACAACTACAACAGTAACAGCAGTAGCACCAGCATGAATTCGTTTGTACACGTAACATCATCGGACATAACTGCAACGTCTCCTGTGTTCAGTAActacagcagcagcagcagcggCAGTCACAGCATAAATTCGTTCGTAAGCGCAACATCATCGAACATCAATGCAACGCCTCCTGCGTTTAAAAACAGCAGTAACAGTGGAAGTCACAGCATGAATTCGTTTGTCAGACGCGCAACATCATCCGACATAACTGCAACTTGTCCTGTGCTCACCAACTACAACAGCCACAGCATGAATTCGTTTGTACACACCACATCATCGGACATAACTGCAACGCCTCCTGCGGTCAGCAACCACAGCAGCAGCGACAGTCACAGCATGAATTCGTTTGTACACGCCACATCATCGGACATAACTGCAAGGCCTCCTGTGTTCAACACCTGCAGCAACAGCAATACTAACAGCATGAATTCTCTTGTAAGCAATAGTGTAAGCACGTCACCGACAACTACCTATTCGAGGGCATACCCTTATATCGAAGAGCCCTCTCCAATGATTGTGGACAAATTTTCCGGTTATTATATTGTGAATGGGCACACCAGCGGACAActtcaacaaaataaacaacaaggaTACAGGCCTATTGTTCCCGCTCCCAACCAATCAGTAAACGTCTGCTCTGATGAGCCCGCGAGTGATCCTTCACTTACTAGCAGTTGTAGTAGCAACAATATTCCCTTTCCCATAATAATCGACAGTTTCTCCATCAACGAAAATTTTCGAGCCGCTGTTGAGCATCGAAGCTTCAAGTATAAGATTTTAGAGTCACAAAGGCAAGCAAATCCTGTTTCCAATTTAATGCCACAACAAACTTCACCACCACCGCCACAAGTCAACCGAGGTCATTTCTCATCACCCTACCTGAATCAAACTGGTCAGTCTGGTTATATCGCTCTTGATAACACTGTTCTCATGAGAGCGTTTCCCCTCGAAAAATTCTACTCGTTTTCTGCACCGGCCGAACAACTACCACAGCCTCCTTCCGTTCGACCTCTCACCCGCTGCTACAAGACGACGCGGACGAACTTCAGCCGCATGAGCCTGGAACCTATCTGCAGTGTGATTCATCCGAGGATCGATTTAACATCTCAGAAATCCGCTACTGAAGTTGCAAATCAAAGGGCGTGGGTTTGGGGAATTTGATCGCTGTTTTATGCTTTGAGAACGTAGTTTGTAATCGActttatgtgttttttttcgcTAATGAACTAGAGAGATTACATTCGTTaaggtttgtttctttgtttggtttgcgTTTCGTTGCTATGGCCAGAGTAAAGACTGTTCAGCTGGTCACTGAGCGGTTTGTGTTGAAAAGTTAACGTTGTTGAATAATATGACATTATATGCTGACGTGATAATATTTGGTTATTAAATAAAGGGGATAGATTGTTATCGACTAGCGTTTCCATTTCTATGAAGAAAGAACGGAAGGGAGAACAAATAATACTTTGTCTCTAAAGAAGTTCACTCTGAGTATGTTCTGTGATAAATATCGTCAAAGCATTGAACGTCAAGACACTAAAATCATATTTGCCACATAACTTCTATCATCTAAAGTACTTATGTGGTGTATACAAGTCTTGCAAACTGAATAAAACTaataccccattcacaccaactaaactgGTTTAACTAAATCAGCTTTAGGTTTTTTTCCAAGTTGTCGATTAcgttttgcagtcattttgagaagacaaattttaaaccatCTTGTTATCATATTTTAGTCAAACACTGAGGTTTTTACGTGGTTAAGTTGTGGGGTGTGCATGGTatgagcaactaatttttaGCCTTGTTCAGTTAAACCACTTTAAAAGATGTTTAACATGTTAGCCCTTTTTAGCTTTGGGAAAGGTTTAAGCCCAAAGGCCCTTGCTTATTTCAATCCCGTCTTACTTTAAAAACAGCATTGAAGCTCGAGTCGTCAAACTTTGTGActtttcctcaaaaaaaaaaacacatcagGGAGCATTTttgtgttaatttgttttg

Protein

Uniprot

Uniprot term	Description
O17212	T-box transcription factor mls-1 OS=Caenorhabditis elegans OX=6239 GN=mls-1 PE=1 SV=1
P24781	T-box transcription factor T OS=Xenopus laevis OX=8355 GN=tbxt PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan