Gene detail

Detailed information of XP_020614365.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2332:3269807...3289472
NR annotation: XP_020614364.1, guanylate-binding protein 6-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020758706.1

TCCCGAAATTTTGGCGTGAGACTACTTTAGGTTTTCCTTTAACTCCAGATTTGGAGAGAGCTGTTAGATGTAGAAGCGAAGGATAGCTTTCTTTTACATAAACATAGACACTATTTAAGTCAAGATTAAGAAAtgcgaattttttttatttttgcgcGGTCCCTCAGTTTGATTTCAATGGTAAGTCAGAGCCAACAGCACAAGTGTAGAATAGGTCATTCAATGTTTCtcggaattaaaagaaaaaaaaaaatcaacaaaacgtTATCATATGTCAGAGGATTATTACTGTTTTCCAGTGGCGCTTGATTTGAATCTCTGTCTGTTATTTAAAGATTTTGCTCTGTTGCATTTTGCTTATATACATGTGTTAAGCAAAACCTTCGTGATAATCTAAATGTAAAGCAAGAAGTTTCCATGCTTGAAAGGTTACACGCCATAATGGGTAAACAAGACATGCGCCACACACTAAAAGTTGATCAATCTTTCTAGGAAATTGGTCCCCACTGAATACTAAAGGAGCATCAGCATCGAAGGAGCATTTTCAGTTTCGATGGCATATTCAAAGAGCTTCTGATCTTGGGTCTGAAAAGTGGGTCTgaaaagtttctttgaaaacctcTTTTTAAACTGGTAAGAATGTGAAAGTTTCTTGtcataaaaaatagaaatcgtGCTATTGACAGATAAAGCTGGATCAAAGCTTGCTGCACCAAATCATGCCTATCTTTTAGCTTATTTAGAAACAATCGACAATCGATGACTCAGTGAAGGATGTAACGTTTTATTTGGTTCTAAATAATTTTGCATCTCTGAAATTTGGACTCAGTCAGGGCTACAGATCTAGTCGATCCGTGGTTTAAAGTATATttagaagaaataaaatgcTGTTGCTAATATTAGAAGCACATAAATAGAGGCTTTTAGATCGCAGTACATAATAACAAAGAAGTCGGGTTTCATTTTTGGTTATTTATGTAACGCTTCAGAGATTCTGCGCCATAACCCTTCGACATAATTATGTCGAAAGTAAATGAATTTAGAAAACGGGGTGAGCCATGATTTAAGAAAGTCCCAAGTGGGGTTTAAGGAATGcgattttctattttctattaCATCAATCTGCTTAGTAAGAGAGGTCCCccctttttcttttaacaaaaattaaagttttagtttcatttcatttcatctgACTATAACTTGTCTGTCTAATGAAACTTATGGCGTCCACGACCCGATGAAGTGTATTAAATACTATTAAATGCACTCTTAGTTGAACCAGTTCGGTTGCTTAATGGTTTCAACAAGACACAATGGCACCTGTGAGAGTTCCATAGAGCTAATTTCGAACACAGTAATTTTGACTTCAGTTCATGATCAGATCATCACTTTTCGTTATGCGGTTATGCCGCATGGAYTCACTGTTCGGTAACACCTTAACAGCCCTCGATTTGATTCCAAATGCCGCGAGACAGATTCAACAACACAAGGAAAAAAGGCTTCTTCCATGTTCACTagtttcttgaaattgactcAATTCCTAGAAACTAGTGAAGATTGAAATACATATACTGATGCAGTGTCATATCAAGACGATTAGGTTAGTATCTACTGCTTTCATTTACTTTACATCTTTATCTTTTTGCTCTGCTAGATTGTTCACATCTTTCAAATTACATTaagcaaaacaatttaataGTGGCTTTTTTCCTGTCTGAAAACTCTATTCTCGTCATGGTAGGCAAACAACTGAACCATACTGCTAAGACTGAATGGCATGCGACAAGTACACATGACATGGGTAAATAAGACCTTTCTCTGATTCTTGGAATTCCAGGTGCACCAAGCATTATAAAGGCTTTTGGTTGCCATCTTGCAGGAACCTAACGTAATGTTTGATACCTATTTATCTTCAAAACCGAATCAACCAAGGCAATAAACTAATTCTCTGCAGAGCAAAGATGAATCCTCAGCCAACACAAGCAAGAGCAATACCACTTTGCATTCCCAACAATTTTAAGTGGAATCAACACACGGGTAATCTAGAAAAAACTAAAGGACGACGTCAAACACTAAATGTTAATGACGAGGCGCTTACAGAGCTGGGAAAAATAAAAGaacCCGTGTGTGTTGTTTCAATAGTTGGACCATGCAGGGATGGCAAGTCCTTTATTTTAGGTGAAACATTTAATCAGCCTGACGTGTTCCCTGTGGGATTTAAGATGGATCCCGAGACGATGGGAATTTGGATTTGGATTTTACCACATACGATAAAGgaTAACCATGGCCGTGACGTTAGAGTAGTGCTCTTAGACTCGGAAGGAACGGAATGTGCTGAGGCGGAAGGACAGCAAGACAACCAGATCCTCACTTTGATAGTGTTAATGGCTTCTATACTAATTTACAATTCAAAGGGAGTTCCAAAGAGAAATGAACTCAATCAACTGGAGTTTGTACTGAAACTGTCCCGTCAAATTCAAGCTAGATCAGGCAGACAGAGTGGTTTGGTTAAAAATGAAGATGCTTTTCATAAGACGTTTCCACACTTCATTTGGCTCCTGAGAGACGTCATGACTGACATACCAGATGACTGTAAAGACATCAAAGAGTACTTCTTGACAAGGgtttttaaagggACAGAAGCATCAGAAAAGGATAAAACCCAATACATTGCTGAAAGCATTCTGCACTTCTTTTCTGAATTTGATGCCTTTTGTCTTCCACCACCTGCATTCAGCAAAGAGTTAATGAAAGATTTCAAACGGAACAAGGATCGTATGAACCCAGAATTCTTCTCCGAAGTGGAGGAGTTTAAAAGAATGCTGCATTCTAAAATCGGTCCCAAGAAAAGCTGTAATGAAGGAGAGTATGTCACTGGAGAAGGACTGGCAGTCTTGACGAAACTGTATGTTGATGCTATCAACGATCCTAAGAGCATACCCAATGTGCAAACAGCTTGGGAAACTCATGTGCAAAGAAAATGCAAGGATGCAAAGAGAAAAGCGATGCAAGCttatgacaagaaaataaaggCACAACTTTCTGAACTGCCCTGTGATGGAGAGAAGATCCTGGCGAGTCATGAATCTGCTATTCGCCAAAGCATGGCCATATTTAACGAAGAAACAGTTGGTATTTCCTCTGACCATACCAAACGAGATTCTGAGGAGCTGATGAATGAAGGAATTCAAAAGCTAGCTGAATGGAAAGCCAAAAATGATAGTCTGACCAAAAACTCCTGCGAAAAACTTCTGAAAGAACTAAAACGAAAGCATTTAGATCCTGTCTTTGATAGAGCTCGTGGATCGGCTGGAACAAGTGTGTCTTACAAGGAAATCGACGATGGCCTTGCCATAATTGAACTGGAGTACAAAACTCATGCAGTGGGTGCCAAGAATGTTCGAGCACAAGTGTTTTACGAATTCCACGAGCGCTTTAAGGCTGAGTGCGACCAAAACAAAGAGTTTCTCAAGGCAATGAAGGATTACCAGAAAGAACTTCTAGAACAACGGCATAAAAACGCCGAGAAAGATAAAGAGACAGAGAAGCTAAGGGAAGAAGCTGCTTATTTGAAGAAAGAACAGAAGATTCAAGAACAAAAGCTGAAAGATTTAGAAGAGAGGAAGAATAAAGAGCTCTCTGATAAACTCAGAGAGTATGAGGCAACAACAGAAATCCTCAACAAGAAAATTTATGATATGGAAAAGGCGGGAATGGAAAAGAAGATCAGCGACTTGGAAACAGAGCGCGATGAAGCCATAGAAGACAAGTTGCAGACGGAATGCCAATTGCACGACTTGCAGGGCGAAATCACAAACCTGAAGGGCCAATTGGATGAAGTCCTGAGACTGCAACAGTTACCTTGGTGGAAAAAACTATTCGGAATGACTGAATAAAGTTAACTGTGTGACCATGGCGAAAACAGAACTTTTAGAGggataaataaacaaagcaatatACAAAAGTTAGGCGCACTGTAGgggaagaaacaaaaaaaaaaaaaaaagaaagaaagaaagaaaaggaaaaaagaaaaaaaaaaaaaacgcgttTAGTGGAAAAATAATTGTAGAGAATACTTCTTTTAAAGAAGTAGATTTCATTATTAAAGTTTGTCTAATTAACGCTGAAACTACACCACGATCTATAtattttacacttttgcttCAGCACAGACTTTTGTCTTCCTTATTGTTACAAACTGCGCATCAAATGATTCAGTAATATTCACAATAGACATGTAAAATGCACTTGGTAACCATAAATATTACATTTGTAGGTAAAATTGAGAGGTAATGATACGTTTTagatattattgttattgttttcactgcttttatCAGTCCAGAGCATTTTCACTTTTGTAAATGTGCGAAACAACTGAGCGTGACGTAACAACATGGTACTTGCCACCTCTTAGCGAGTAGACGCTACTGGACTTCTAGATTGGcgggtttgtttttttaatcattgtcactgtcattaCAAAGGGTATCGGCTAACAGCAATATAAAGCCTCTATTGCATATACTTTTCATTTACAGTTGAATGCATGTACCTAAAGCTCTTCCTCAGCCATAAAAAAAGGATTAGTAACTGAAAACAACGCAAGGAAATAAATAGTTTGAACAGGC

Protein

Uniprot

Uniprot term	Description
Q0ZHH6	Atlastin-3 OS=Rattus norvegicus OX=10116 GN=Atl3 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02263	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan
PF02841	GBP_C	Guanylate-binding protein, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036543	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015894	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR003191	Domain	Guanylate-binding protein/Atlastin, C-terminal	Interproscan
IPR030386	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20899	GBP1_3_4_7; guanylate-binding protein 1/3/4/7	-	NOD-like receptor signaling pathway	ko04621	deepkoala