Gene detail

Detailed information of XP_020614825.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2365:477951...480485
NR annotation: XP_020614825.1, Bardet-Biedl syndrome 10 protein homolog [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020759166.1

TTTTCTACAGCAGAAGAAATATTTCGAAAGAGCTCGTCgcgatctctgtgttggtcgTGCATGTCATGAGAGAGGATTGAACCCACTCTTGGCAGGATAAGGTTACCACGCAAGCAGAACAAATGATCGTATCATATTCCACACTGAATATCCGCCTCCAATTCCCACATCAAAGGGCAGTCAGTATttcgtgataaacaaatatttttccacCGGGGCAAATACTAGCAGAACTTTTGAGTGACTTGGAACAATCTAGCTTGACGCAGAATGGCTCACACGACGTAGTTCAGCCGACCACAAGTTATCGTTTGGCTAAGCTCCAGTCCGTATTATTTTGGTTCGCCAGCGTAGTTTACCCTAAGCTACAAATACTACTGGAAGAAGTTAGACTGCAGCCTGCTGTAATTACAATACAAATGAGGCCATCTCCTCGCATCACCGGGCAATGTTATCGGTGTTTTCAAAGGGGACCTCGCGCGTTTTTTCGACAAAAGGCGGCCATCTTTGTGTCTAATCCGGGAGTTTGCAATTTGGAAGAACGCTGCTCAAAACTGCTATAAGAACGTCGTCTCAATTCAATATGGCGGTTGCATTGGAAGCATTGAAAATTTGTGAAACTTTAGAAGGAATTTTAAAGCCATCGTTTGGACCGAATGGACTTGACGTCCTGCTCAATTCATCTTCAGGAAATATACTCATAACCAACAATGGTGCAGTGATTTTGAAATCGCTGAATTTGGACAATCTTATCGGTCGAACCATCgttgacaaaattatttcatactGTTGCATATCTGGAGATGGGGGAACCTCATTTCTTCTGCTTTTAACGACAGTGTTAAGAGAGGTTGTTGGTCTAACGGGAATCAGAGCAAAAGATAATGGAATGGACTTCTCCTCTCACCAAAGGCAGTCCCTTGTTGCTATATCTCGAGCTTTTCATGAGTTTGAATCATCTTTACTGGAAGTCGTTCTTGTCCCAGTTCTCGACAAAATCGCAGTAAAGACGGACATTGAGTTAAAGTATTTCTCATTAATAAAACAAAGAATCGTAAGACTCTTTGTCACATCATTGAATGGAAAATTCCCGATCAGTACAGTTTCTCATTTTGCTGAACTTCTTTGCGAGTTGATGACAAAAACTTGGAATTCATCAGAAATGTCGTTAAAAGATTCACTGCTACATCTGATCGATGAATTTCCTCATATCTGCATAGAAGTTCCAGGGCTACCCGTTTTGTCATCTCAAATCAAAGCTGGAATATTAATTCCTCGTGGATTTGCTACAGAACAAGAAGGAGTACCAACAAATTTGGATGACTTTATGTTTGTGGTCATGAATTGTAGTCTTGACACTTCAGAGCCAGAAACATCTTCATCAATTAGAATCAGAAAGAATGTTTCTTTTGATGCCAGCATCCAATGGAAAAGGAAGCAGGTTCAAAAAGCAATCGTCATGTTTGCAGATCAAAATGTTAGATTGATTCTGTCGTCACAGAGTGTGTCTGATCTTGTCTTGCATTTCTGCAGGCAGTATGACATAGCTGTTGTCAGCATGATGCCCCAGGAATATGCAGACTACATCTGCAAGTGTGCAGGTGTGCTAGCCATTGACAGTTTGGATGGTGATAATCTATCAGAACTCTTTTTGGTTAAAGGTATTTCTTGTGGTCTCCACACTGTAGGTCATCACAAGTTTGTCCACCTTCAGTTTGACTCtctaaattgcaaatttattccACACAGTATACTGCTTTGCTCACCAGCACAAGGACTGTGTAAACAATACTATCTTGCTCTTCATCATGCATTGAAATGTGTCAAGATGTCCTTAAGTGAAGATGAAAAAAGGTTGCTTTTTCTACCTGGTGCTGGAGCATGTGAACTGGCCATGAGTTTCAGTTTGAAGGCTTTTTCTAAAAGTGTAACAGATTCACATTTGTTGCTAGTTTTGGAAATTCTGGGTAAAGCCTTGCAAACTATCCCAAAAATGCTCCatcaaaattctttttctctGTCACACCAAAAGGACAATTTTATGTTCTGCTTGAATGAGATTGAAAGATCTTGGAAGCAAGATCGAAAGTTGCTTGGGATAGATGCAAAGACAGGCAAACCAGTGGATCCTTTCAATCTTGAAATTTACGAGCCTTTTCAGGGGAAATTCTTGCTCTTACAAAGCTTACTGCAGTACTTATCGCAGTTGTTGAGGACGGAGAAATTGATTGGtgtgcaaaaaaagaaatagagtGAACAAGAATTAACACCTAATTGGAGCACTAAAATAAAGCTCCCTGCGAAGtgtgaagttgttttcttgatctTGTCTTTTGTGTTAGTTTCTACAGATACTGGCAGTTAAGTTAAAATGTAGTTTGCTATTGACCAAACGTTTTGTATAAAATAAGGAATATCCATTGTAGGCTACAGGCAGTCCGAGTAAGAGAATTGAGAGTCTTAGTAGACCTGAACTTAGTAACTTACTTCTTACAAGGAAATGTTGTTTATCATTGCTTCATTCAAGTCTTCTCC

Protein

Uniprot

Uniprot term	Description
Q5R8P3	BBSome complex assembly protein BBS10 OS=Pongo abelii OX=9601 GN=BBS10 PE=2 SV=1
Q9V2S9	Thermosome subunit alpha OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=thsA PE=1 SV=2
P46219	Thermosome subunit alpha OS=Saccharolobus shibatae (strain ATCC 51178 / DSM 5389 / JCM 8931 / NBRC 15437 / B12) OX=523848 GN=thsA PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027409	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027410	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR042619	Family	Bardet-Biedl syndrome 10 protein	Interproscan
IPR027413	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR002423	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR017998	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14667	BARDET-BIEDL SYNDROME 10 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0051131	Biological Process	chaperone-mediated protein complex assembly	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19401	BBS10; Bardet-Biedl syndrome 10 protein	-	Cilium and associated proteins	ko03037	deepkoala