Gene detail

Detailed information of XP_020615704.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2440:202911...205988
NR annotation: XP_020615704.1, versican core protein-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020760045.1

tagtggagggaggaaaaccggagaagctggagaaaaaccctcagagcaaggcgagaaccaacaacaaattcaacccacGTATGTATGGCACCGGGctgaatcgaacccgggccacattggtgggaggtcAGCGCTCCCATTAATGTGCCATCCCTACTCCCCAGTCTTTGCTTCCCTTTGAAAAAATGGTTGGTGCCTAAATGTTATTCTGCCCGTCTCGCTTTGGTGAGGTTAAATCCTTAGATGACAGTTTTGTTTCGcagaaaactaaattttgaaTAAACGCTCCTGGTAGTTTGTCTTACCAAGTCTGTTTCGCAAAACGACGCCTTTCCATTACGTTTTGCCCAGCcaatgttaaaattattaaaatgcTTTATACTATCATAATTTACTGTATCACCAGGTGTTTCGAAACTTCAATTGATCATCCTAACCCAGCTATATTTCTGCTTGCCCAAAAACATGGGTCGGGAGACTATGAATTTGTAAAGCATACTTGGAGTTCGGGTTGTCTTTTCACTTTGAGTGGATAATTGACCAAAGCCGAGCGTAAGCGTGAAGGGCAATAGGGTAAATGTTCAGCAAATGTTTATGAGTAATCATTTTCAGTCGACTTTTAAAGTTTTCAGAAAAGTCTTTGCTTAAACAGAAGAAATTCTTCAACACAGTAGGTCATAATTGCAAACTGTTGACCTGTCGCACTATAAGAAAAACCTATAAGGAATATGCCTTTGTATGAATGGCGCATAACTTTGAATAACAGCACTTTGTACATCCTCAGCCTCGtacttatgtttccagacaaaggatttttcacatgaatgcgaggcttaggatgtataagCATTGTGATTCAAAGctaggcgccatttatgcaaacgGTCCATGGTAGCAAGAAACGGAAACACAGTTCAGATCCCGTTTTAAAGCAGTACCAGTGTGACGGTTAAAACAAACCATGTTGTTACTCAAAACTTAAGACAACATTACATAATTATGCTATTCCTTTTGCTGGTGAGAAATGTCTAGAGCACATCAGAcaataaagatgaaaagaagCTATCGGCAGTCAGGCTTGCCGGCTACTTTGAATATTTAATTCTGCGTAATGTGACCTCAAACCTGTGATGACAAAATACGATCAGAGTTGATAATCACTTTTCATGGTAtctgttgcattttttttttttttttcggtcggCATATTCGAAGTAGATTTTGCAGCAATCCCCAACGACACGAATAAGTTCTGCAAGGAAGAATAAAAAGCAACCAAAACCTACATATTAAGTTATAAACATCATTATTTTCGAAAAAATCATGCTGATGCATCGACACCTGACTGCATTCAATCATCACCGAGACAGCGATTACATCATTCTTTTCGCCTCAGCTGAGACAATGTAACATAATCAACAGCTGGCTTTTTAAAAAGCATTTGAATCACAAGTCTATAttacataatttttgttttgttaaaaaaaatagcgTTGCAAAAATGTATCTTACGTTGACCAAAAACACCTTCCAAACCAATGAAGCTTtgggaaaaaaatctttgtcagCTGCCTATAAAATGGTTACTCCACTTTGTGGATGTTGTTTAATTAGTTGTCGCTCATGCAAAGAAAGATACGTCGAGAGGTTTCTACGTATACCATGAAACTTGTCCTTGTTGTCGTGATAGCGTTGGTATTTTCCTGCAGCGCACTTGCCAATGGTAATGTGGAGTCTAAAGCAAGCCCTGTTGAGCTCGAGGAGCAACTCGGAGACATTGCAGCTAAAGAGAGCAGATATTTTCTATCCGCGTTGGAGTTCGTAGAGGATTCATCTGGTGTCAGTCCGTGTGCCATTGCTCCGTGCAAGAATGGAGGAACGTGCCAACCTATAGCAGGTGATGACTTCACTTGTCAATGCACCGAAGGATTCTATGGAGATAATTGTGAAAAAGACGTCAATCAATGCCTGACTTCTAAACCTTGCTTAAACGGAGCTACGTGTGTCAACAAACCTGGAAGCTACAGCTGCACATGTCCACAAGGGCATACTGGGAAAAACTGCGAAAAAGGCAAATaa

Protein

Uniprot

Uniprot term	Description
P14585	Protein lin-12 OS=Caenorhabditis elegans OX=6239 GN=lin-12 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23636	WFDC2; WAP four-disulfide core domain protein 2	-	Peptidases and inhibitors	ko01002	deepkoala