Gene detail

Detailed information of XP_020615818.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2449:534349...543881
NR annotation: XP_020615818.1, nuclear pore complex protein Nup214-like, partial [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110053856

ATGGCGGATAGTGAAGATGAAGAAACTCCTCCAGAGCGAGATGTGAAGGATTTTAACTTCAAGCAAATGAGAAAAATACGAATGTTTGAATCACCAACAAATCTACCCAAACCTCGCTCAAGTTTACTTGCTGCTTCGACCAAATATGGCTTGACTTTTGTAGGTTGCCCTACAGGAATAAAAGTGATAAAAACTGAAACTATTGAAAGGATCAACGAGTCTGATGAAGGGAGTATGCAGAATATTGTGGGGCACTGTCCCTCATCGTTCATTCAGACTGGGCGTCCTGTACAGTTTGTTGGTTTAAGTAGTGATGATCTTACTCTATCTGTCTGTTATGAGAATGGAACTCAAACTGTCATGGTGCTCTATGATGTACCAACACTCGGAAGCTCTAACCCTTCAATGGCCAAATTTGGTGAAATTACTCTAACTAGAGATGAAGGAGCAAGTGTTGGGAATGTTCTGTGGAATCCTGGTTTTCCTGGTATCTTTGCTGTTTGTCTCAGTTCTGGCTCTGTGGCAGTGATGGAGTTGACAGAAACAGAAATAAAAACACTGGCAAACCTTCCTGGAAGTGTGAAAGCAAGTGCAATTTGTTGGAGTCCTAAAGGGAAACAGCTAGTAGTGGGACATAGAGATGGCAGGTTAACTCAGTATTCACAGGCTCTGGAGGTGAAAAGGGAAATAGAATGTCCTGAAGTTTTCATTGATGATCCCCATTCAGTGACAGATCTGTTGTGGATCACTGCAACATTGTTTGCTGCTGTTTACTCTAGTTTCGATGATGGAGATACCCCAAAGTTTCAGCTTATTTCTGCTCCTAAAAATGAACCAAGGACCATAACTAACTTTGATGATATTTATTATGTGATGAGCGAAGAACGAGAACCAATGTACTATTTGAAGAACATTGCTGAATGGACTATGGTTGTTTCTGCTTGTTCTAATGGTTTTGAATCTGCCGTGATTGGAAAATATGGAGGAGAGGCTACAACCTCGTGGGAAAAGTGGAATTTTGAAGAAACTGGACGTGCAGAGATGCCGCTGACTAACGACAATGATGAGACATTTCCCATGGGTTTGGCATTTGACTTTAGCTCAACCAGACCAGTTATTGAAGGAGAGAAACGCCTTTCTCCTGCCCCTATGATGATGCTTCTGTCAACAGATGGTGTCTTGTGCCCATTTTATATGGTGAATCAAACTCCTAATACAGATCACAGTATCATAAAGCCACTGGAGCCTTTACCCCTAGGAGGACAAAGAAAAGCAATTATATCGTCAAATGCAGGTCCTTTGTCAACTGGTACACCAGGCTTGGCTCCCAAAGAGAGTGTTCCATCTGCACCTAGAACTGCTAGAGACCTTCCTGTCGGCGCCTTTGCATTTGTTGGAACCAAGCAAACTTTTTCATCTGCATCTGGTACATTTTTATCAGGGATTTCAGGGACCCTCCCTGCAAGTGCTTTTTCACTTGCCAGTTCCAAGCAACCTGTTTCCTTTTCATCAGTGACTCCAACATCAGCAGCACCTTCAAGTACACCAGCTAGTACCTTGTCATTTACCAGCTCCAAGCAGAACATTCCTTTGTTTTCTGGTGCACCCTCATCGGGTACATCAGGGGACCTTCCAGCTGGTGCCTTCTCATTTGGCAACCCAAAACAACCTGTTTCCTCTTCGGGGAATGCCCCCACCAGTGCCTTTTTGTTGACTAACCAAAAGCAGCCAGGGTTGACAGCTACATTCAAGCTTCCAACACAGACCCAAATCCCAGCAACAGAATTGGAGAGACCTTTAGCCAGTAGCCCACAGCTTGTGAAACCCACATCTAGTAGTCAGACCCAACCTGGTAATCGTGGACTATCATCTTTCCAAACGCCTTTGCTCACTACTACTTCAATTGCAAAAGGGGATGATAAACCAAAGGCAAGTTCCTCAGTTCCTTCTCACTTGACAGAGCAAGGGTTATTGGCACAGCCAAAGCCAACTCTTGCCAGAGCTGCTGTGACCAAAGCACNAAGTTATGTGACA

Transcript

rna-XM_020760159.1

CGGTACGGGCAAAATGGCGGACTGATTGATCCATGTGAAAGTCAACGTTACTAACCGACCGTATTTCAGTTTAACGTTCCTGTAGAGACTAAAATTAAGCGATATCTGTTGAAAAATGGCGGATAGTGAAGATGAAGAAACTCCTCCAGAGCGAGATGTGAAGGATTTTAACTTcaagcaaatgagaaaaatacgAATGTTTGAATCACCAACAAATCTACCCAAACCTCGCTCAAGTTTACTTGCTGCTTCGACCAAATATGGCTTGACTTTTGTAGGTTGCCCTACAGGaataaaagtgataaaaactgaaactattGAAAGGATCAACGAGTCTGATGAAGGGAGTATGCAGAATATTGTGGGGCACTGTCCCTCATCGTTCATTCAGACTGGGCGTCCTGTACAGTTTGTTGGTTTAAGTAGTGATGATCTTACTCTATCTGTCTGTTATGAGAATGGAACTCAAACTGTCATGGTGCTCTATGATGTACCAACACTCGGAAGCTCTAACCCTTCAATGGCCAAATTTGGTGAAATTACTCTAACTAGAGATGAAGGAGCAAGTGTTGGGAATGTTCTGTGGAATCCTGGTTTTCCTGGTATCTTTGCTGTTTGTCTCAGTTCTGGCTCTGTGGCAGTGATGGAGTtgacagaaacagaaataaaaacactGGCAAACCTTCCTGGAAGTGTGAAAGCAAGTGCAATTTGTTGGAGTCCTAAAGGGAAACAGCTAGTAGTGGGACATAGAGATGGCAGGTTAACTCAGTATTCACAGGCTCTGGAGGTGAAAAGGGAAATAGAATGTCCTGAAGTTTTCATTGATGATCCCCATTCAGTGACAGATCTGTTGTGGATCACTGCAACATTGTTTGCTGCTGTTTACTCTAGTTTCGATGATGGAGATACCCCAAAGTTTCAGCTTATTTCTGCTCCTaAAAATGAACCAAGGACCATAACTAACTTTGATGATATTTATTATGTGATGAGCGAAGAACGAGAACCAATGTACTATTTGAAGAACATTGCTGAATGGACTATGGTTGTTTCTGCTTGTTCTAATGGTTTTGAATCTGCCGTGATTGGAAAATATGGAGGAgagGCTACAACCTCGTGGGAAAAGTGGAATTTTGAAGAAACTGGACGTGCAGAGATGCCGCTGACTAACGACAATGATGAGACATTTCCCATGGGTTTGGCATTTGACTTTAGCTCAACCAGACCAGTTATTGAAGGAGAGAAACGCCTTTCTCCTGCCCCTATGATGATGCTTCTGTCAACAGATGGTGTCTTGTGCCCATTTTATATGGTGAATCAAACTCCTAATACAGATCACAGTATCATAAAGCCACTGGAGCCTTTACCCCTAGGAGGacaaagaaaagcaattatATCGTCAAATGCAGGTCCTTTGTCAACTGGTACACCAGGCTTGGCTCCCAAAGAGAGTGTTCCATCTGCACCTAGAACTGCTAGAGACCTTCCTGTCGGCGCCTTTGCATTTGTTGGAACCAAGCAAACTTTTTCATCTGCATCTGGTACATTTTTATCAGGGATTTCAGGGACCCTCCCTGCAAGTGCTTTTTCACTTGCCAGTTCCAAGCAACCTGTTTCCTTTTCATCAGTGACTCCAACATCAGCAGCACCTTCAAGTACACCAGCTAGTACCTTGTCATTTACCAGCTCCAAGCAGAACATTCCTTTGTTTTCTGGTGCACCCTCATCGGGTACATCAGGGGACCTTCCAGCTGGTGCCTTCTCATTTGGCAACCCAAAACAACCTGTTTCCTCTTCGGGGAATGCCCCCACCAGTGCCTTTTTGTTGACTAACCAAAAGCAGCCAGGGTTGACAGCTACATTCAAGCTTCCAACACAGACCCAAATCCCAGCAACAGAATTGGAGAGACCTTTAGCCAGTAGCCCACAGCTTGTGAAACCCACATCTAGTAGTCAGACCCAACCTGGTAATCGTGGACTATCATCTTTCCAAACGCCTTTGCTCACTACTACTTCAATTGCAAAAGGGGATGATAAACCAAAGGCAAGTTCCTCAGTTCCTTCTCACTTGACAGAGCAAGGGTTATTGGCACAGCCAAAGCCAACTCTTGCCAGAGCTGCTGTGACCAAAGCACNAAGTTATGTGACA

Protein

Uniprot

Uniprot term	Description
P35658	Nuclear pore complex protein Nup214 OS=Homo sapiens OX=9606 GN=NUP214 PE=1 SV=2
Q80U93	Nuclear pore complex protein Nup214 OS=Mus musculus OX=10090 GN=Nup214 PE=1 SV=2
Q9W1X4	Nuclear pore complex protein Nup214 OS=Drosophila melanogaster OX=7227 GN=Nup214 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR026054	Family	Nuclear pore complex protein	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23193	NUCLEAR PORE COMPLEX PROTEIN NUP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan