Gene detail

Detailed information of XP_020616081.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1155:1284381...1295566
NR annotation: XP_020616081.1, receptor-type tyrosine-protein phosphatase F-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020760422.1

GTCACAtgacaatgtacatgtagatgatcATCAGCAGACACTTGTAAACAAATTTGAATTACAATCGAACTTTGACCATCGCTCTGATCACTTGTCAAACTACAAGTTATGTATCTTCTAAAATGGCAGAGGCTGGTGGTGAAAttggttttcttcaaacacaaacaaaccaTCCTGCTATATGTCACTCAAAGGTTCAGTGGAATTTAGTCAATGGAACACTACATTGTGTTCCATTTTTTCCTAGTAAACTGACCCCTGGATGGAGGGAGGCCCCTGTACTGAgattgcccaagaacaaagTATAACAGACAATCACCAGTATCTTAATTAAGCCTGAAGTTGCACTACTTAAAATTGTGTTATTCCTTAAAATTGTGTTGTTCGccatggaaggttttttagTTTAAAACCCACCCCCCTGGAAATTTCGGTTTAGTTTCGCACTTTAAAACTTTTGACTTTTGGAACCCCCTTCCCCCTTGGGATTTCCAtaaaccttccttggggtggatatgaatattttctggaattgcacTTTATGACACCACTATCAGATCACACCAATTCTTTTAAAAGTAATGAGGACTTGTTTGAAGGATAAAGCAAGCTGGTGCAGGCTAATTTTACGACAAAAGACCCAGTACTTTTCTCTGCAGTGTTTATTAATTAAAGGCTTTAAGACCAAATTGTAGTTTTTATGTATAGTGTATTTTTGTTATCTATAAATCTGAAAATGTGACATCATTGAACAAATTTTCTTCTATGTGAGAGCAACCTTTACACATAAAGTACCTCTGAACACAACAAACTTGGTGCACAATAATCTCGAGATTAGCGTGAAtactttgtttactttttcttttgtttgttaattttttgagTCATTTATGCCCTGTGCCCCACTGGGGGCTAGAAGgaatgatggtgatgatgatgactgtTACTGTACAATCAGCTTGTTCTTccataaacaatttttttttaatttcattctaGCACCAACAGCAACTCTGACAGCTCCAAATGGAGCTCTCGACAGAAGCTTCACACACTTAATATGCCAAGTCACAGGGAACCCAGAGCCAAGCATCACATGGTACAAGAATGGTGTAGTTCTTACCGTCAGGGCCAGGGCACAGAAGTTCCCCATTCCCAGTGGTGAGCTGCTTCGTTTAGGCCCCACTTTGAAATCACGCCATGAGGGTGATTACACGTGCAAGGCTTCAAATGCAGATGGCACAGCAACATCTCAAACAACGTCGATAAAAATCTACAGAGCGCGCAGCACGCCATCGGGATTTCCAAGAGTAGTTAAGAATCCTCGATACGCTGAAGTAACGAGCGGAGATGATGGTTCGTTTGAGTGTAATGCCACAGGAAACCCACTCCCGGTGATAACATGGCTGAAGGAATCAGTGCCCCTCGACTTGTCAGACCCAAGAATCAGCATACCCAAGCCAGGGGCCGTGAAAATCACTAGTGTCCAGGCTTCTGACGCCGGACGGTACACGTGTGTTGCGACCAATAGCCTGGGGATGGTGTATTCACGTGTCGCAACCCTCAGACACAAAGTCTCTTACAAGAAACCAGTCATCACCAGTCCCCCTCAACCTGTCACAGTCGACCCAGAAACAGTTGTCTACTTGAATTGCTCGGCCACAGGTTACCCAAAACCATCTATAGTGTGGGAACGTGACGGCGTCAGACTCGCAGGGGGAAGTGCTGATGGCGTGTTGACCGTTCAAGATATTCAGAAGTCTGGGAACTACACTTGCCTTGCAGTTAATAACAGAGGACAAGCTCGAGCCTCGGCTTACGTCACTGTACGAAAATTGCCATTCGCTCCAACAAGACCCACCACAACGCAGATAACTGCAGACTGGATCACCATCACATGGAAGCATGGAGGAGGCCCCCAGGTGGACTCTTACACCTTATACTATCGCGCCAAGAGCTCGAGTCAGTGGATAGTCATCAAAGACATTCGTGGCCGAACATCTATGAGTTTGAAGGAACTCCAGCCTTATACTACTTATCAATTTCGCCTGTTTGCTCTGAACGACCTGGGGACCAGCAAACCTAGTCCTCTGGCTGAATTCAAAACATCCCCAAAAGGTTTGTATTTCAGGAGGTCCCGTCTCACAACTCATCATAATTAATTCCGTGGGACGTAAAGGAACCCACAgactgatcgaaaagagtaggggacgtagttcccggtgtggtggtctatctctcatctgatggttaaataCTCGGAggtattagctgcataagctactctgaaatccgagggtaaataaagtaatgtatgtatgtagcaGTATTTTACACGCGCTTGAGCAGATACGGAGAGGGAGCCGAGAGTTAATGGCGCTGATCGCTGGTTCATGTTCTTCACTTCGATGCTACagagtaatatatcaaaaaacaaaagaccgtctttgaccacatttccaaacaccgagaacagagttaaaaatacaacGCGTAGCGGTGTATTTTTGATTAGCGTCGAGTAGTTTACAAACGTGGTCTTACAtgttttgatatatcttctcaatcgaaactgaaactaaggagaaaacagttaaatacaATCGTAAATCtgataatctgtgatagatcaggtatccaaacaccgtccCCCAACGGGATGAATGctttatgagtttgagaagtggaGTTTAAAACACGACCATCCGGAGCCGCTCCAAATCCTCCATTTGGTCAGTATCTCAACAATTGAATTCTCATCTAAGCGGTGCAGTGGCCCCAGTTAGAGCAGTAATGGGAATTTCCAGCTTCATGTTCCTTTCACGTGTAAACCAAAACTTCCTACTTGTACATGGTAGTTTCCATCACCTTTACAGCTCTGCGGTAAACCGTTGGTACCGGCATGGCAAAGGTCTTTGATTCGAAACCCGAGAATGACCATGATTTTTGGTAGTGAGGGTATAGGGGTGTCTGTAATCTGGATTGTATTTCACTGTGTACTTcataaagtgaagccttggagccgactggctgcc

Protein

Uniprot

Uniprot term	Description
A4IFW2	Receptor-type tyrosine-protein phosphatase F OS=Danio rerio OX=7955 GN=ptprf PE=2 SV=1
P23468	Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens OX=9606 GN=PTPRD PE=1 SV=2
Q64487	Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus OX=10090 GN=Ptprd PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan