Gene detail

Detailed information of XP_020617425.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2601:1850930...1883585
NR annotation: XP_020617425.1, uncharacterized protein LOC110055381 isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020761766.1

GACTGAATAAACCTGGCgtagtcaatcaataaaaatcagTATCCGAAACCAATTGATTCAATTGATATTAATCGATATCAATTGCTGATTGCTATTGATTGATATCTGCAATCAACAAATAACAATTGAACtcacagaaaaatttctttatcaaTTACTATGGATTGGCAAAAATTGATAACAATcgattggaaaaaaattgacaataacCACCCAGACTATTCAAAGGTGGCTTTGTTATTGTACAAAATAATACCTGGAGCAACACAAGACAGACAGTCATCTTCagcattatattttatttcagtcttctGGGGTCTAAAGCAGATTCTTGGCAATCGTCCATTCATAGTTGTGTTAACACATGCATCCCGAAAATTGTTTCTTCTTTCACATGTCAATATTTACGGTAGCAAAGTGATTACTGCTATGCAACTATATTATATTTCCTTCTGGCCTACGTTGATATCTATTCTGGTATTTGTTTCCTAATGCAGATAATCAAAATCACTAGAACAAatgactctgttgtttatttgcttCATCTTACATAATACCAACACTACAATGAGACTGGAGGATGGTACACTGTTACTGCAGCCTGAACTTCTTTTGGTGGTTTAAACTggcaaagaaagatgtaaagcccaaaatgtttctcttaGTTGTTTCTGTTCTCATCATTTTGTTGATAATTATGAAAGATACACAGGCTGTGATAAAATGACTCTGACGAAACCATTAcagtcaaattttgtcaaacattttatcagcGTAACTttgtaaaaggacaaaataatTTCCGTTAACAATCAATAGCAGTCATTTGATGAATCAGTCGTTATCAATTACAATtggcaatcgataacaattgaAGTCACAACTATTTTTTCTTCACTGATTTTCATCGATTGCTGTTGATATCAATTGATATCGATTATTggtttattgattgattatgcCTGTAATAATTATAGATGGCCGCAATAATGAGGTGgttgtattaacagggtggctgtAAGGCAGTCAGTGTAAAgcgcagactgtggactgcagacttcAGGCTGctgaccaggggtaaaatgcagactgcagtcagcagtctgcattttacattgACTGGCTGTAAGCAGGGTTCCACTGCAATATTATTTAAGAATTATTCTGAgggttttttcatttctttttcacatgTAGGTAGGTGTCCTCTATAAGTATGGGTTATCCCTCAGTTAAAGCAATTAATTTTGTGACATTAATTTAGAGTTATAGTCATTATTTAATGTGGTCAGGGTGaaacacagactgcagactgcagactgcgaaTGGGGgaaaaaatgcagactgagggtgaaatgcagactgtagactttttaactaaaatgtgttaccatttccatcattgacaGCTAACTGTAAACAAGCTAACAGGTGATTACAGAAGTGCTATTGAGGCTAagctgagtgatattcagtctaacctgagtgatattcagtctagcCTCAGTGATATTTACTGGCCaaccagagtgcagactttcactatGATTAGGCTGAACAGCCCTGTTTATGGTCAGCAatcaataatggaaataatgcgatatatatttaaaaagtctacagtctacattctgcattttatccccggTCTAGAGTCTGCGTTACAATTGTAACTCTTACTGTTatttaatgtggctaaatgtaattaaGGTAAAGTTTGACTCAAGCCAATGCTGGTCAGTGGCCTTTCAGGGCAACCATACTCTGCACAGGGTCTCATATGGGGTTTTTCCATGGctgacatgtacatgttttgCTTGCCGGCTGAGTAAGAACGTGCAATTTGCCTCAAGTGCCATTAATACTTTAAGTGCACTTTTGCTCCCTTGCCTCCCTCCCTAATTTGCTGGTGATGGTAAGTATATGTGGTGGTAAGTACTGTATCTCCACCGACTCTGTCAGTGTGGCAGTACCTGGTGGTTGCCACctagggttgccatggatacctacAGCTGTATGTGCTCTGCTTGAGACTTGTATCTCGGCTCCACCATCCCTCAGGCACCTTGCCCATTACCTTAGCAATTGGTGACGAGTTTATAATACTGGGAAATCTTATTTTACTTGCAGATTCTTGGCTGCACTCATAACATATTATAGcaaactggtctgcctcctgccagttaggatttttaatatatttcattatttcgctgcaatatttgtttgaacAGCATGACAGGGAAGTTGAAACTTATTTGTAACTGATCTGAACATTACCACTGGAATGACACCATCAGTATAAAGTTTTGCAAGCTTATAAGTGGTTGccttagttttaatttaagCTGGTACTGAATCTCTTTGgcgattttttttcacttggaaGAAATGTCATAGAATACTTAATATAGGAATCTCTTATTAAAATTAGTATTTTCtgagcaataacaacaacaacaacaacagttatcTGTAAACAACTATTTCTCTATCTAGTTAAGGATGGCACACCTACAGATGAAGAATTAGAAGAATTAGGTGATAAAATTgtagaaaactggaaaaagctTGGGCGTCGCCTAGATGTCACTGATTCAAAGCTCCTGGAAATAGGTCAATCTCACGACCAACCTTCTGAAAAGGGATATTATATGTTAAAGCactggaaacaagaaaaaggtTCTGGTGCAACCTATCAAGCATTGTGTGACGCTTTAAAACATAGACTTGTGCAGCGCCAAGACTTGGCTGAGCAGTTTTGTTACATTAATGGACCGCTGCCTGCTGGTCATGTACCAGAAGAAAGAGTGACAGGAGAAGTACCTGGTGCTTCTGCAGGTGCATATACTGGAACTTCAGCCCAACATCAAGACAATTCCAGTGGAGTGAAAAGTAATCGGAAACGGAAAAGTTCGGATCCAAATCCCGAACGAGgTAACTTGCCTATGAAGATTTCCTGTGCTAGGGCCACCAGCAGAAACTCACGGAATCAAGATCCtcaagaagaaagagaaaaagtgaATAGATATATGGAAGAGAAGATTGATGAGGTGAAATCGCAGAGAATGTTTGATCTCTCTACAACTATGGGGATACGTCACTTCTGTACGTACTTAGTGGGAGAACTTCATTTAATGAATGTGAACTTCCAAAAGAGTAGCATTAAAGTGATTGTCAAATGCGGTACCATGGAAATACTTGAAGGCCTGTGGTGTGATTATTGCTCTGGTCACCTAAATGTAGTTGCCGAGGAATGCCTTATTACAGAAGAGGTTAAGGAGGAGCTTGGTATGGATACCATAAAGCTAAACACAACTATCTTGGAAGAGGACTATGTAGCGTGCAAATTGTCTTTGATAGAAATTCCAGCTCAATTTGTCCcagctgctgctgctgatgtgGATGATAGAGGAGGTGTAGAAAAATTAACAGGACCAGGGAAGGGGAAAAAGAAGCGAAAAAATAAGGGAAGAGGCGGTGCTGGCAGAGGACGTGGCAGAGGACAAGTTTTACCCACTCCTGGAAGACACAAAGGTGCAGGAAGATCTGTTGATGATGAcgaagttgaagttgaaagcGAAGTGAGACCTCCTACAGGAGCAAGGTCCGTTCCTGAGGCTTTAAGCTCTACAACAGCTGAATATGATGAACTGCAAGAGCCAGAGATAGGGCAAGAGAGACCGAGAGAGACCAAGACCATAGCTAATGAGATAGTAGGGGAAGTTGGTCGTGTTGCTCCTGCCAAGGCCAGTACAGCAGTCGATAAGAAACAAGAGCCAGGCTGTTCTGCTTCTAGGGCCAAGAccaaattaaaaggaaaacaacagcaAGTTCCTGGTCCGAGCAAGTTATCTACGTCATCTCCTTCCTCTGGTACCAACGTTAAGGAACCTCAAAGTGTGGCAGCTGCCAACACCACTGCCTCTACTCTGCCTTCCACTGTGACTGCTGCTGCTGGTGCTGCTGAGGCAGCTAGTGTACCAGCCCCCAGTTCTTCTGCTGCTGTTAGGAGAACTGGTGTCCCAACCACCACTGCTGATGGTAAACAAGATGTAGAAAAATTAGCAACAAAACTTGCCTCCAGCTTGACTACAAAAGCTCGTCAAACACAAGGAAATGGTGGGCCACATCCCCCTAAAAGACCAGGTTATGGTACTGTAGGCCGCCCTATAAGGTTAAGGGCAAACTTCTTCCACCTCAATGTTTCATCACAACTATCAGATCTCTACCACTATGATGTAGTGATTACCCCAAACAAGTGTCCCCGATCAGTGAAGAGAGACGTTGTGAATGAAATCATAAGGAGGTACAAAGATACAACATTCCAAGGTCACCACCCTGCTTTTGATGGCGAGAAGAATTTGTATAGCAGAATCAAACTTCCTCCAGTGAGTTTAGGTCTTACTGCTGTGTAAAACTCCTGAACCGTAAGGGACCTGGAGATATTGCATTTACATGATTGTGTATATTAGAGAGACAAATCCTATTACA

Protein

Uniprot

Uniprot term	Description
A3KPK0	Protein argonaute-3 OS=Danio rerio OX=7955 GN=ago3 PE=3 SV=1
Q8CJG0	Protein argonaute-2 OS=Mus musculus OX=10090 GN=Ago2 PE=1 SV=3
Q9QZ81	Protein argonaute-2 OS=Rattus norvegicus OX=10116 GN=Ago2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16486	ArgoN	N-terminal domain of argonaute	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032474	Domain	Protein argonaute, N-terminal	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488	Domain	Death domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0016246	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198	Molecular Function	miRNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan