Gene detail

Detailed information of XP_020617475.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2601:1382653...1386194
NR annotation: XP_020617475.1, uncharacterized protein LOC110055427 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020761816.1

aTGCCAGAGACCACCCTTGTAGGACCCTCACTCACTAAAGTTCCTCAGCAGTTTTTGATCATCAAAGAAGGAGCAATTGCAACAATTTCTTGCGAAGCGTTCAGTTACCCTCCCTCTGTCATTACGTGGACACGTGCCTTGACTGGTTTACCCAAAGCAAGGAGTTCCGTTATTAACGGAACATTGCGCATTCGAGATTTTTCAGTTCATGACACTGGCTCGTACGTGTGTACAGCTGAGAACAAAGTTGGCAAAAATAGGGCTTCCACTACGTTGGGAATTCAAAGGAAACCAGTTATTTCCTGTGAAGAGGTAATTACAAAGCACTCTGCAAAAACGTCTGGAAGCTTCGAGCTAACAGCAACCTCCATCCGATATACGGTGTACTGTGATATTAAAGCTGATCGTAAAGGCTGGACTTTAATCGCTCGATTCTCAAACAGTGACAATAAAAACTGGATGCGCAACGACGGCAGCTGGTGGTATGACCAACAAGTCTCCGTGGGAACAACAACAGATCCTTCTATTAACTCTGACATGATCTCACCAGCCTTTTGGTTGGTCAGCGGCAGAGAAGTTAAGATCACGCGCAGTGATGACCCCAGTCATACTCCTTTGTTACAGACCACAGGTAACTGTTTGGCTGGACAAACATTCCGatcaaaaatcacaaattatgGCGACTTTAGAAACGGCAAAGTTTGGGCCAGTGACCGGTGCCAGGGAAGCTGTACGGTTCAATATGGCGGTCAGTACAAGTCAACAGACGGGTTTCAACAGGCTGAGTGCAGTGGAAACATCCAAAGCGCCAACAACATCGGCTTCTGGTGTGATTGGGATTCTGGTGATGGATCAGTGATGATGATTGGTGGAGGAGGAAATTCTTGTGCACGTGCTGATCACGGAATTGGGATAACGGAAGAAGACGCAGCAAAGTTTCGTGTTGCAAATGCATATGACTTTGGCTATTCTGTATCCCAATCCTACTCGTTAAATCTGTGGATCCGTTGAGCAGGACTAACCTAAgttctattttttcaaagaaattacgATCTGTATCAAAATTGAACTCTTCGTTGGTAGTTAAAAAGAAGGTAAAACTCAAAAGGcggcaattttgatttctattgtttcaaataggtATTATAGGATGCTCGGAGGAAGATACATATTTCCCCCTGGGCATCCCagaatagctatttgaaacaatagaactcAAATTAGCCGCCGTttcgccgaaaaggtccatttaaAATAGGGTGGGTCAGTAGTTTCAAGCATTTTCTAGCACTTGATGAATCAATGCTACCACACTTTTTCAACCGATCGATGCCGTAATTAAgtcctttttagcttgggcggtttgttgccccgcTTAGACTATGcccttgagaattcttgctttcaaactGCCGAATAGTCTCGTGTATATGAATAGATGATTTTTAGATGGAAAATAAGAACAATTCTCAAGAGGATATCACGTGGTTTGTCTGAATGGGAAatcaaaccgcccaagctaaaaaggtctattctgCTGTAAAAATCTTGAAGCccagtcattttgaaaaaaagatatgGTCACTTCCATCATGCGAAAGGTTAGCAACAGTGTAACCTGTTAAGGGCACCCGTTATATCggctttaataaaaataaatgcttgTAACTAAAACAGCAAGTCCGACGACcccattttatttattacaacCGAAATTGTATTAAGGTTGCTAATTGAAATACAAGTTTGGCCAAAAAATTAAACGGAGGGAGTTCAGATCAATTTATGTTTTCTACAATTTGTTGTAGCTCTGAAGCCGctcccacttttttttttttaatttcctgaaGAGTCAAATCCTGACATGCTGATTATAAATCGATAATAAAACGTGTGGTTCACAGAAGTAACAAGTTATATCGTTGGCATGGTAACTTGCAATGCTAAGGAAATGGTCATAACTTGTCTGCCAATTTGTGACCTTTTTAatgccatgattgtagcatgagttcgtatagtgtgatcgtcctggtgagggtagttctgaaaagaactgttgttggtgactgacgtttcgacaatgAGCGGAAGTCACCTTCAGAGTCCAGTGAATAGTGTTGGCTCGttagtcgatgatgttataagtctggtctgttgaatgtgattggtcagtt

Protein

Uniprot

Uniprot term	Description
Q7TPD3	Roundabout homolog 2 OS=Mus musculus OX=10090 GN=Robo2 PE=1 SV=2
Q9HCK4	Roundabout homolog 2 OS=Homo sapiens OX=9606 GN=ROBO2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR014716	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan