Gene detail

Detailed information of XP_020617545.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2603:24204...37168
NR annotation: XP_020617545.1, receptor-type tyrosine-protein phosphatase kappa-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020761886.1

AGATAACCCCTTTTCGCACTTGTTTTCATATCAGGTCCAACAGACCACCGAATGCAAACCTTGATGTAGAAAATCAGAAAAGAAAGCGACGAGAGTTTGAGCTACGACGCTCCAGTACTAAAAAGAAACTGCTTGCTGCTCCAGGTGAAATTACAAATGATGCAGACCATCCCCCCATACCCGTGGAGCAGTTTGGGAAGCATGTGACGAAAATGCACAAGTCTGATGATCGTGGATTTATGATCGAATACAATAAATTGGACAGTGGTCAAGAGTATGCCAGTGATGCCGCGCTGCTGCCAGAAAACAAGGCAAAGAACAGATATGGCAACATTATTGCTTATGACCATTCTCGCGTTGCACTGTCCCCAATTGAAGGAGTGGCAGGCTCGGATTTCATTAACGCCTCAAGAGTTGATGGATACAACAAACCAAACGCATACGTTGCTAGTCAAGGCCCAGTCCCTCCCGCCTTTGACGATTTTTGGAGGATGGTATGGGAACAGCGGTCAGCTTCAATAGTCATGTTGACAAATCTACAAGAGAGACACAAGCTGAAATGCCACAAATACTGGCCAGACGAGACACAGGACTACGGAGACATTTCTGTGATGCTTGTTAAGTCAGAGCACTATTCAGACTACATAATAAGAACGTTTAATGTGAAGCGGGAAAGCGAAAAGGAGGAGAGAGAAgtgaaacagtttcatttcactgtGTGGCCTGATCATGGCGTGCCTGAATATCCCACTGCCTTGCTGGCATTCAGGAGACGAGTCAGAGCTTATAACCCGGCTGATGCTGGACCGCTTATTGTGCACTGCAGtgcTGGAGTTGGCAGGACAGGTACATTCATGGTTATCGATAGCACGCTCGACAGGATAAAGGCGGAAAGTACAATcgatattttcaactttgttgcTTACTTGAGAACACGAAGAACAGCCATGGTTCAAACAGAGgaGCAATACACCTTTTGCCATGACGCCATTTTAGAATCCGTGCAGTGCGGCAACACACAGATCTACGCTCATGACTTGAGAATAACGCTAGCTCGTATGAATGAAGGGAACAAAGAATCCAAAGTGACACGCTTTGAGTCTGAATTCAAGACACTCAACAAAGTCAGCCCAGTACTACACAAAGGACACTGTATTGTGGCGTCGTATCCAGAGAACAAGGAGAAAAACAGATCGCAAGAAATTCTAGCACCTGACTGTTATAGAGTGATTCTTACTGCAATTGATGACAATGAGTCCACTTCCTACATAAATGCTGTTCATATTTCGgGTTACAAGCAGCAGCATGCTTTTATTGTAACGCAACACCCTATGACTTCCACCGTGACTGACTTTTGGCGCATGCTCTGTGAGCAAGAATGTTCCTGTGTCGTGTTGTTTGATTCAAAAGAGGAAGAAGCGGATTTCCCAGTCTTTTGGCCCGAATCTGACACAGCGACCTACGACGACATGTTAACGGTCCAGCGGTTGGCTGTCAACAGTAGCAGTGTAGATAACTTGAAGGCGAACTATGACCAATCAGAAATCACCGAGAAGACCTTTAAAGCCACTGACCTGAGAACGCCTGAGAAGAGTCTGCGGATAAAGATGTTTCAGTACAGTGGTTGGGCCGATGGCAATAAAGTTCCCTCAGGTTCTGGTCTGATTACTTTGATCGCTAAAGTTGAGAAGTGGCAGCAGCACTCTGGAAACGGACCCATCACAGTTATCTGCAGTGACGGTCTTGGTCGCAGTGGAACATTTTGTGCGCTGTACTCGGTGCTTGAACGCCTGAAGATCGAGCAAGTCATCGATGTATTTCAGGCGATCAAAGCCATGAGAATTTCCCGCCCTGGACTGGTGAAGACTGCAGCGGAGTATAAATTTATCCATTATGCCATCCAAGATTACTTATCAGCCTTCGATGACTACGCGAACTTCAAGCCTTGAAAGACAGTCTGCTTAGAACAGAAAAgtatgaattgaaaaaaaaaagctaacagCTATGAGGACGCTTGAGGTCTCCTTTTGAGATTGTAGCGTAAATCAGCCACGCTTTTAATCAACTATCAGATCAGCTTAAAGCTTAGTAGGACTAAAATGAGTTAATATCGCGTGCGTAAATTTAGTCAGTCTTCAGACACTTTATTTTGTCGTGAGTTCGTTGATATAAACGTCTGTGGACTTGGATACTCTTACCTGACACCCGCGGGTCCCTAAAATGAACGCATGTTCCGCTTTGGAACTGTACTCCCTCGCGCGAAATCCACGCTATTAGTGGAACAGAATTCTGTCAGTTATATCCGCAATTCGATTGCGAATCAATTGAATTAACTTCCTTTTACGCATTAGTATTCTATACAGtatagttattttataattgtaCAGAGACTGAAATAgcaacagaaataaaagaatgacCTAGAGGGGTATAATACCTCCATAGAAAATTAGAATAGCGACTGACAGAAGGGACTTTCTACGGAGTTACCGACAGTTGCCATAATTGAATTGATGCTTTTTAGGTGATTTCACattaaaagtgatttttgaTAAAGTGTACATTAGATTACTGCAGGAGTTTTATGTGGTCGAAACTTAGTGTTTTGTTTGCCCGTTATGTATTATAGATACAGTGTAGGTCTGCATTTTGTCCAAAAATTGATTATCGATGGAAAGGTCATTGTTTGGCAAATTGCTGGTTTCAAAGTTCTACGATAGTCAGTGAATCATCAAAGTTATTATCGTCTTAAGTTGACATAAAAGAGTGGGTAAAAGTGTCGCGAAACAGTTGTTTAGGCATGGTCTCATGGTCTGACACTACGTGAAGGATTTGCAGTAACAGATGTAAGAGTAGATTAAAATGAAATGCACATTTAGTAACTTAATGGTGCTATCCCTTAATGAtagtttttattatatatatgaaAATCTTTTATAAAGTCATTTCAGTATTGTAAAGCATTGACTTTGTTTGGTGACTTTTTGCGATGTTTGAAATGCCAGTTTCGTATAGTTGCATGAGATTGCTAGCTCGAAAATTACGAAGCCTTAACACACCTTGAATGCGCCAATGTGTGTGGTATTTGCTCTCAACGGTATGCTAGGTAACTCTGTAAGAGGTTTATTGTGCGTGAGGTAAATTGAGACCTTTTTTATAACCaggttgaaattatgaaatgtttttacatgtaaaatgtagtTAGCCAGATATAATATAGAATTATATCTAGAAATAGCAATACCGAAATGCTGAATGCGAACCCTAGTCAAATCGCAGaggctttttcttttattataaatctattctattattataaatataacaagtattttctttctctaAGCAAGTGCATGAGAGTGAATGTATTTCCAATAGTGACCAGGTTAtggttttataatttataagtGATATTTTACCTATAACTAAATCTAAATCTATAAGCATAAAGGGGTGTCTTTATTCTAAATTGCCTAAGGAAAGGACTGCAGTAATCCAGAAACATGGATAACCTTTATGCCCGTCATCGAAGcatgaagtttttatttttaacctcaGTAGAAGGTAAACAATTTCAGTGTTTTCGAGGGAAAATATAAATACTGTTTCCCAAGGAACCAGTGATTATTTTGTTAGATAGCTGCAGTTTTGTGCAAAGTACTAAGGCAGGAAGAATTAAGAGTAACCTCTGGTTAGTGGAAGAGCGGGCGGCCTTTAGATTTAGTCATTGCTacgtgaccataaatcaaccaataatAGCGCACGTTAGGTTCAACTTAACTCCAGCTGTATAACAAAAACACTTATTAAAGTATGgtatgataaaaatgaaaataaataaatttatgaagTTAATGGA

Protein

Uniprot

Uniprot term	Description
F1NWE3	Receptor-type tyrosine-protein phosphatase S OS=Gallus gallus OX=9031 GN=PTPRS PE=1 SV=3
B0V2N1	Receptor-type tyrosine-protein phosphatase S OS=Mus musculus OX=10090 GN=Ptprs PE=1 SV=1
Q13332	Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens OX=9606 GN=PTPRS PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR050348	Family	Protein-Tyrosine Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan