Gene detail

Detailed information of XP_020618233.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1162:692853...696547
NR annotation: XP_020618233.1, tctex1 domain-containing protein 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020762574.1

GGGGTACAAATCGACCAAGGAGATATCCGTATACCGTATCTGTGAATGGATTCATGTCAGGGGCCAAATCCACCAGAAAATCGGCTTACTGGTATTCTCAAAATTCCTCGCAGTCATATGGGCGTTGCCTCTATAGAGCATGTACTAATCGGATAGCTTTAGATTCTTAGGACAAATATACCGCGTGATGAAAAAATCAGGACCATTCATTAATCATAGTCAGGTTGCCATTCGAAgtatcaaaaaaatatatatatatatttattacacgactaagcTAGTTCACTGGGCCAATCACTAAAATGCTCCATTGCCAGTCCAGTATTCTCTAAGTATTGTGGACTGAgcactgtcccgaatgatcccgcacGATCACTCCTAAAGGTTATTTTATGGTAGTTtcatatttcaaataaaagactccttttgtttttcttctaacTCTCTCTCCCTTCCGTTTTGTTTCATATCAGACCTGAGGTACACGTCTAGTCGACTTCCAAACAGAATTGTGCGCTTGTGCGCTTGAAGTTTGAGATGTTTTCCCAGTCCGTGATCGTGGTACTTTCAATCAACATTTTGGCTCCTGCTATTCCTCTGTCTTTTTTGTACGGTCCTCGCTGCGTTAGGTCCGTACTTTGAAGATCTCGGGCCGATATTCCcacagtacggccctcgcgcttGGCTAATAAGATATATTGACTTGCTATATATGTTTAGAGAAGCTCAAAAGTtattgaacagtactttcatgtcGTACTGTTTATTAATgactttttaattaatatacTGTAAAAGATGCATGGCTCAAACTTGTTGGTCTGTAggtgatttaaaatttaatgaaaGCTACTGTTAAAACCCTCAGTGAGGTCCTCAATCGTGAGGCACTGCCCAGATCTGTTTGGTCTGACATTTTACAAATACAGTTTAACCCCGCTATTTCggactctcaggggaaacgaaaaatagttcgaaatagcgggagatCGAAATAGTCgagcaaatccaagggaaaatggttttgaggccgaaataacggggaattcggaataaccgagttcgaattagcaaGGTCTAACTGTAAACTTGTCCGTCTACTCAAATTTAAAGTCATTATGTGTGGTATTATGGGTGAAAGCCATTTGGGGGAGGAGTATTTAACCCATGCCAATTAACAGGAACgtcattcattatttttaatcatCCATTTAAAATTTGAATAGAAAATTATCCATTTATGTCTTTTGTTTGATTAAAGAACAATGTGCTATTGACACATCTCTCAATAGGACCGGATTATTTTCAATCCTGTGACACGgaaaacagtgtttattttctcttgtaagACCTTGTTTTCTCGTTCGTTTGGAGGCGACTTTTCTCTCATTAAGTGATCAGCACAGAGTTAAACCGCTGCATTTCATTTCACTGCCTTTCAAGTCACTTTCTGGTTATAACAGTATGGAAAGTAAACGGGAAGAAAAGAAACTCAACAAACTCCAAAGTGAAAGCAAATCTATTGAAGAGGAAAACGAAACCTCAAGTCCTTCCATTTACGCTGTTGTGGCCGCTCACTCTTTATCAAAAGACATAAAACAGAAGTCACTGCATCTGATCAAAGTCAAACGACGGCATGGAGACTGGGGACAGTTTGACATGACGCATGCGTGGTCGCCAGAGGACTTTATGAGCAACATGGGGAGTCGGCAGAGTAGTGCATTGGCACGAGACAGCTCATTGGTTGATGAAAATTTGACTATGGCTCGTCCCTTTGTTATGGAACCCCTAAAAACCTTTCAGgaACACCGTGTTAAACCAATTATTCAACAAGTTTTGGAAACAAACCTGGCTGAGCGGACGTATGACCCAGACTTCTGCAAAGACGCTGCTCTCAAGATAACCGAGGAGATCAAGGAACGAGTAAAGAAACTTTGTTATCCAAGATACAAATTCGTTTGTCACGTGGCCATAGGAGACATCAATCAACAAGACGTGAAAATTGTGAGCCGATGTGCCTGGGACTCAGCGGTCGACCGTTTNGACTAG

Protein

Uniprot

Uniprot term	Description
Q3B8D7	Dynein light chain Tctex-type 5-A OS=Xenopus laevis OX=8355 GN=Dynlt5-a PE=2 SV=1
A2VDD2	Dynein light chain Tctex-type 5-B (Fragment) OS=Xenopus laevis OX=8355 GN=Dynlt5-b PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03645	Tctex-1	Tctex-1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005334	Family	Dynein light chain Tctex-1 like	Interproscan
IPR038586	Homologous_superfamily	Tctex-1-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21255	T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005868	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0045505	Molecular Function	dynein intermediate chain binding	Interproscan