Gene detail

Detailed information of XP_020618715.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_274:2183306...2186193
NR annotation: XP_020618715.1, retinoid isomerohydrolase-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020763056.1

ATGTGCAATTCTGAAATGCAACTGAATATCCAACGGTTCTATGCGAACATTCAATTCTGATCTGATATTCAGTCACTGAATCCGGAAATTCGGCATGGTACTCAATGAGCCGAGTAGGACTGGGCTTCACTGATCAGTAAACGATATTTACGATAATTAGTATGCCCGCCAAAACgtaatttataaaaatttatGCACAgtcggaaaaagaaaaaacatgacTAGCAGAACAGAATAGAAGAATTTTCAATGCCAAAATTGAATATTCAGATCCCACAACTCCATATTTAATTGTATTAGCATTAGATATTTTAATGGCATGACATTACAATTCAATTTCGATTTTGGCCGTAATCACACTCTACTGACGATCTTGCTACTTTTCAGAATCTTGCCCTAGAACTGCCCTGTGCTGCAAACTGTAGCCAAGATATATGTGtcatcacgtgatcactttCACCACGTGACCAAAGGTGCGTTGAAAGGGCTGAAAAAAGACGTCTGAGATCAATAGTATCAttcaattttctcttttctagACTCGATCATGTCCTCTGAACTAGACCTCTTTTGCCTGTTCCAAACGATTGACGAACATCCGGACCCGATCAGCGCTGAGGTGAAAGATAACCTCCCCTCCTGGCTGACTGGGACCTTGATTAGAAATGGGCCTGGTAGATATGAGTGCGGCGACACTTCCTCCAACCACTGGTTCGATGGCCAGGGACTTTTACACCGCTTTCACATTCAGAACGGCCACGTAACCTACAGCAACAAGTTCATACGAAGCGAAAGTTATGCTGACTCTTTGAAACATGGAGAATCCATCCATCTGGAATTTGGTTCATTTATTCCACCAGATCCGTGCCAGAATATCTTCCGCCGTTTCTTTTCGCGGTTTTGGGCAGATGAAGTTCCTTTTGACAACACCCTTATTAACGTCTTTCCAATGAAGGATAAAATCTATGCAACGACCGAGAGCAATTTCCTATTTGAGATCAACCCTGAAACCTTGGACACCTTAAAGAGAATCGATATCACAAAGGAGTATCCagGCGACACCACAATCAATTCTGCTACCGCCCACCCGCACCAGACCCCAGACGGTTCAGTGATCAACATATCTATCACGCATGGCCAGATCTCTACTTACAACATCATACAAATACCACCATCCTCGGGCAAACCTGACGAAAGACCTCTGGACGGGGGTAAAGTGCTTTGTTCTATCCGTCCCACCGGTGGGACTGGGTATATGCACAGCTTCTGCCTCACAGAGAACTATGTTGTGGTTACAGGAGCTCCCCTCATCATGAACGTGTGGCGAATCTTAACTCACAGGTTCTTTGGGTCGTGTGTTTGTGATTGGTTCTACTGGGATGAAAGCCAACCAGCCAAATTTCATGTTGTCGACAGAAAACAAGGGACGCATCTTGGTATCTTCACAGCGGAGCCGTTCCTGGCGTTTCACCACGTAAACGCGTTCGAAAAAGACAGCAAGATTCATCTAGACGCTTGTTGCTACCACGGCAGCTCAATTATGAGTCAGTTCTACCTGCACAATTTGCGATCTCCCAGGGGGCCTGGCGAGCAGAAGTTTGACGTTCCGGATGTGCGCCGATATGAGCTCCCTCTTGAAGACCTTGGAGACGTGGAGCCGGGTACACCACTTCCCAAGGGAGCAGACGGGCTGGATTACACTTTGCTGTATTCAGGAATGGATTTGCCAAGGTTCAATTACAGTGAGAAGAATGGCAAGCCGTACAAGTTTGTTTATGGCGTGGGGGGTGAAGACGAAGCTCTCTTCAGTCTACTGGTCAAGTTAAATGTGGAAACCAAAGAGTTTGTGACATGGAAGGAGCCCCGGGGATTTGTCTCGGAGCCTGTGTTTGTCAAAGTGCCTGATGGGAAGGAGGAAGATGACGGTGTGGTGCTGTCATGCGTGATCAACATCACTGACTAGACCACCTCTCTGTTGGTATTGGACGCGAAAGAATTCAAGGAGCTGGGCCGAGCCGTGGTGAAAAGGATTACTCCAATGGCCTTTCATGGCTTGTTCCAGGACTAGTTTAAACAGGTTGCGGACCTGtagaaactgaaataaacttttccacttaattttctgaaacaaaCTTGCAATTTTTCCCAAGCTCTGTGATTCTACTTCTACTCTAACAATTGTTTTTAATCATAAACAGACACAGATGAATCGTATATATTCAAAACTTATACTTGTCCTTACGACAGAGAGAGGAGATTTCTGatatagaaattaaaaaaaaaggtagtGATATTTGCCCAGTATTTTGGTTTGGAACTGACAAATCTAGCAGTTATGCTAGTTaactgtttacaaaataattcaatggTTGGTCAATAATGGTTGGTCAATAGTGCAGTCGTCGCGCCTACACTGTTTTTCTTaatgagaatattgtttttccggcccaggctgaatattcatatttttctgccgattttag

Protein

Uniprot

Uniprot term	Description
Q91ZQ5	Retinoid isomerohydrolase OS=Mus musculus OX=10090 GN=Rpe65 PE=1 SV=4
Q6QT07	Carotenoid-cleaving dioxygenase, mitochondrial OS=Mustela putorius furo OX=9669 GN=BCO2 PE=1 SV=1
Q8AXN9	Retinoid isomerohydrolase OS=Cynops pyrrhogaster OX=8330 GN=RPE65 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03055	RPE65	Retinal pigment epithelial membrane protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004294	Family	Carotenoid oxygenase	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10543	BETA-CAROTENE DIOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0003834	Molecular Function	beta-carotene 15,15'-dioxygenase activity	Interproscan
GO:0004744	Molecular Function	obsolete retinal isomerase activity	Interproscan
GO:0010436	Molecular Function	carotenoid dioxygenase activity	Interproscan
GO:0016121	Biological Process	carotene catabolic process	Interproscan