Gene detail

Detailed information of XP_020618818.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_274:1562835...1574249
NR annotation: XP_020618818.1, pre-rRNA-processing protein TSR1 homolog [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020763159.1

TAGTGAGCAGTCCATGCATGATGACGAAGAACAGTATGAAACAGTGAGTTTAGCTGCCACTGACACAGACAACGTTAAATACGATGAAAATATTGACGTGGATGAAGAAAGAGAACAGTTGGAGAAAATCCGTGCAGAGAGAGAAAACGAAATGTTTCCAGATGAAATGGACACGCCCATGGATCAAGCTGCTCGAGTTCGATTTCAGAGATACCGTGGCCTGAAGAGTTTCCGTACTTCGCCGTGGGACCCAAAGGAAAACCTTCCATCAGATTACGCCAGAATATTCCAGTTTGAGAACTTCAAAAGAACAAAGAAGCGAGTATTGGAAGAAGATGATGTGGATGGAGCGTTGCCTGGCTGGTACGTGTCCATTCATATCGCTAATGTTCCACGTGCATTTATGGAATCAATGGAGCCCAGTTCTCCGCTGGTGATATTTGGATTACTTCCTCACGAACAAAAGGTGTCAGTGGTTCATTTCGTGCTCAAGAGACATCCAACATTTAAGGATCCCGTTCAATCCAAGGAAAGACTGATTTTCCATTGCGGTTACCGAAGATTTTCAGCGTGTCCCGTATTTTCTCAGCATACATCGGGGGATAAACACAAGTTGGAGCGGTTTATGCCACAAGAAGGAGCATTTGTGGCCACACTCTACGCGCCTATCATGTTCCCTCCCGCCCCAGTCCTAGTCTTCACACAGGATAAACACACAAGTTGCCACACCCTTGTCGCTACAGGATCGCTTTACAAAGTCGATCCCGACAGAATTGTTGCTAAGAAGATCGTGCTAAGTGGGCATCCTTTCAAGATCAACAAACGATCAGTTGTGTTACGATATATGTTTTTTAATAGAGAGGATATCCAGTGGTTTAAGCCAGTAGAACTCTTTACCAAATATGGAAGAAGGGGCCACATCCGGGAACCTCTAGGAACACATGGACACATGAAGTGCGTATTTGACGGAGCTATCAAAGCCCAAGACACTGTCTGCATGAATTTGTACAAACGAGTATTCCCTAAATGGACATACGAGCCCGCGATATTGCCACCTCCAGCAGAAGCAGCAGGGGACACTGAAGATGCTATGGAAAtaCCTGGCTGGTACGTGTCCATTCATATCGCTAATGTTCCACGTGCATTTATGGAATCAATGGAGCCCAGTTCTCCGCTGGTGATATTTGGATTACTTCCTCACGAACAAAAGGTGTCAGTGGTTCATTTCGTGCTCAAGAGACATCCAACATTTAAGGATCCCGTTCAATCCAAGGAAAGACTGATTTTCCATTGCGGTTACCGAAGATTTTCAGCGTGTCCCGTATTTTCTCAGCATACATCGGGGGATAAACACAAGTTGGAGCGGTTTATGCCACAAGAAGGAGCATTTGTGGCCACACTCTACGCGCCTATCATGTTCCCTCCCGCCCCAGTCCTAGTCTTCACACAGGATAAACACACAAGTTGCCACACCCTTGTCGCTACAGGATCGCTTTACAAAGTCGATCCCGACAGAATTGTTGCTAAGAAGATCGTGCTAAGTGGGCATCCTTTCAAGATCAACAAACGATCAGTTGTGTTACGATATATGTTTTTTAATAGAGAGGATATCCAGTGGTTTAAGCCAGTAGAACTCTTTACCAAATATGGAAGAAGGGGCCACATCCGGGAACCTCTAGGAACACATGGACACATGAAGTGCGTATTTGACGGAGCTATCAAAGCCCAAGACACTGTCTGCATGAATTTGTACAAACGAGTATTCCCTAAATGGACATACGAGCCCGCGATATTGCCACCTCCAGCAGAAGCAGCAGGGGACACTGAAGATGCTATGGAAAtataaaacgaaaattaaactgGCTTCGATAAAAGTCAAGGACAGAGACGGCCAAACAAcgtacaagaaaataataaggAGATCTTAGTTCTGTTATCAACACTAATTTGAAGGTCAACTCCTTCAAAGTCGCATTAGCCAGGTCTCGCTTAGTATTACACAAACTGGGTTTGGTGTTTGCTTGTTGAAAGACTACGTACTCGTTAATACCCGTGTACCCAATCAAACAGCCACAATCTTAAATAAGTTACATACGCTATATTACTTAGCCTACGACAATCGCGTGCTGAGTCACTTGCTCAGTCCGTTCTCCAAGGTAGATTTCTTTGTCCTAAAATGGGATCCATTTTTTAAGTGAATCGATCGCAACAAAGGTAAAAGAGAAAATAGGAGGAGACACGTGGGGAATGTTTTATGCCTAGCAAaacgtttttatgttttaaaaagtttgccCAACTAGTGTTTTGCGAAGTTTTACATTTCTGTAGTTCAAAGTTTAAatcttttctcgttttcttttgGCGTTGGTAGGATACATAAGGTAATATGATTTGAGTTAGGATAGATAAACTTGAACGCGGGTTAATAAATACAACTGACGTACGCTAA

Protein

Uniprot

Uniprot term	Description
Q5SWD9	Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus OX=10090 GN=Tsr1 PE=1 SV=1
Q2NL82	Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens OX=9606 GN=TSR1 PE=1 SV=1
Q5R434	Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii OX=9601 GN=TSR1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04950	RIBIOP_C	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007034	Domain	Ribosome biogenesis protein BMS1/TSR1, C-terminal	Interproscan
IPR039761	Family	Ribosome biogenesis protein Bms1/Tsr1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12858	RIBOSOME BIOGENESIS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000479	Biological Process	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0030688	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0034511	Molecular Function	U3 snoRNA binding	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14799	TSR1; pre-rRNA-processing protein TSR1	-	Ribosome biogenesis	ko03009	deepkoala