Gene detail

Detailed information of XP_020619202.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2753:779574...786216
NR annotation: XP_020619202.1, DNA-directed RNA polymerase II subunit RPB2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A5PJW8	DNA-directed RNA polymerase II subunit RPB2 OS=Bos taurus OX=9913 GN=POLR2B PE=1 SV=1
P30876	DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE=1 SV=1
Q8CFI7	DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04561	RNA_pol_Rpb2_2	RNA polymerase Rpb2, domain 2	Domain	Interproscan
PF04565	RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	Domain	Interproscan
PF04563	RNA_pol_Rpb2_1	RNA polymerase beta subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007642	Domain	RNA polymerase Rpb2, domain 2	Interproscan
IPR007645	Domain	RNA polymerase Rpb2, domain 3	Interproscan
IPR015712	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR007644	Domain	RNA polymerase, beta subunit, protrusion	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0032549	Molecular Function	ribonucleoside binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12814	PRP2; pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2	EC:5.6.2.6	Spliceosome	ko03041	deepkoala