Gene detail

Detailed information of XP_020619405.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2783:649906...660604
NR annotation: XP_020619405.1, glutamate receptor 4-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020763746.1

ATGGTGCCTTACTGTTCAAAGCTTGGTTGCTTAACACAACTCACTGACCGACTGTCAGGTACCCTTGAAGTTAAGCTGTTACCAGAATGTGGTAGTATCATTGAAGCTTACGAACTGCTTGCATTTGCTTACGATTCAGTCCAAGTTATTAACCAGGCGGTAAATACAGATCCTTGCCTGTCGATTAACGGATCTCTCATCAGTTCAGAAGATACAGAAGCAATGTTGACCTGCTTGAAAAAGATTAGCCTGGATGGTTTAACAGGACCTGTCAACTTCAATGAGTATGGGCAGCGAAAAAAAACTGATCTGGAAATTCTGAATCTTCGAAACAATTCGTTCAAGAAAATAGGTACATGGAATTCAACTAAAGGTGCCGTACTGTTTGGAAGTGTCTTACGCAACATGGACAATCCACTCTCCAAAGGAAGTCTCGAGGGAAGAAAGCTTAGGGCTGTTGTAGCTTTGGATGCACCTTTCGTTATGAAGGAGGAGAACGAAGATGGCAGCTATTCATATGAAGGATATTGTATCGATCTGCTGAATGAACTGGCAAGAAATCTTAAGTTTACATATGAGATCTACGTCAGCCCTGACGGGATGTACGGTGCTCAAACGGAAAATGGAACCTGGAATGGAATGATTGGAGAAATTGTGAATGAGcGTGCTGACATCATAGCTGCGGCACTCACTCTCACTGAAAGTCGAGAGAAGGTTGTGGACTTCAGCGTGCCTTACATGTTCTACACGGAAGATATGTTACTGAAAAAAGCATCTGCCAAAGAAAATATTGATTTGTTGCAGTTCATGAATCCGTTCGACCCTCAAGTCTGGTTCGCTACTCTGGCAACCTTGGTTGTAATCTCTATTGCTGTGTTTGTAATAAACTATTTCAGTCCTTATGGatacaaagatgaaaatggCAAAGGAACATCGGAGGAGTTTAGCTTTTTCAACAGTGTTTGGTTCTCATTGGCTTGTATGTTGCAACAGGGAGGTGATAACACACCAAGAAGTTTGTCAGGTCGTATTCTTGCTGGATGTTACTGGTTCTGTATTCTTATCTGGGTTTCAACTTACACTGCCAATCTAGCTGCTTTTTTCACGGTGAAGAACGCCGAACATCCCATTCATAATCTTGACGACATTGTGAAGTCTTCTTACAAAGTAGCAGTACTTGATTCCTCAAGCACGTCCGAGTTCTTTGAGACAAGTCAGTACGAGACATACAAAAAGATCTGGCACAGAATTGAGTCGGGGAACACCCTCGCTAAAAATGTTGAGGAAGGTGTGAAGTGGGTACGAGAAAAAGAGGAGCACGTGTTTATCGCGGATGGGCCATTTCTCAGACTGTTGGCTAACCAGCCACCTTGTGATGTCTCAGTAGtgccAGGCTTGAGCACAGCTAAAGGACTCTCATTCGCTTTCCAAACAAATGATCCGCACACTAACGAATTCAAATTAGCCATTTTAAGGCTTCATGAGAACAACTTCCTCTCCAGCTTGGAACGAAAATGGTGGCAAGATGCAAATAAATGTCccgaagaagaagaaacaacGCTGTCTCGAAAGCGTATCGGAATAATGAGCATGTTGGGAGTGTACATAGTGCTGGTTGTGGGGATGCTCATTGCTTTCGTGACGCTGATTGCAGAGATCTTCTGGAAAAGAAGGGCGAGACAAATCTTGTTTGACAAAGTTCGAAAGCAAAGGTTTGTAACCGTTTTACCCCTCTATGGTATCTTGCGCTATTCGGAGCTTGCTATATGATTTAGGAAGATTTAGGAAGGGACTTGTGCGACTTCTTGCTGCACAACCACAGTGGATGTTATCTAGACCTTAGAACTGGCATCATATATTCTTGAAAATTCCTATCATTGCTGTTGCTAATTTGAATTAtcatctatatatatatatattgctaATTTGGAATTGTCGCTCTGAGTATACAATGACTTACGTGGAACTGATAAGTTTGCGTCTTCATGCcctcacatttttgtttttgtttttttacatttccacAGGGTAAAGCTTCGTGCCTTTAAAATCCGCCCAGGAACTGAGAAACAAACTCAGTAGTAGATCGCCACATGTGTTTACCACACACTTGGTTATCGCGCGTGTGGAAATACAATGAAAACTACTCCGCATTTTCTATTTATCTGAACACTACACAATTTCCATTTAAGTATTCTTGGTTTAACATTTTAATTCAGGCCCAAAGTCAAATTTGCGAAAAGGCTGAAGTCtaaattggaagaaaaaaacGACAGAACGAACGGAGAGAAGGGAAGAAGATTAAAAGAAAGGAAGTTCAAATATCACCGGAACGTGCTCCCTTCGCTTTCTAGTATATATAATTTTACACATCTTTGTCATAAGTGTCAGAATAAACACTGCAGCAGCACCACGTACAGCAAAATCACATGTAAAATATTTCCAACTGACCGTGAGGTAGAATATCCGTGGTTTGTCTTCTTAAGATATCTTTTGATGCCTGCGGCAAGTGGAGACGATGGCTCACAACAAGTACCTTATTTCTCACAAACAGGGTAAAAAACTTCTGTAAACACGCATTCAGTTCTTGTACTTGCTATTCTTCTAGTTGAAGCCCTGAACAGCTCCAAGTCTTGATTTGTTACTCAAACTGtattcagttttgtttctgGTTTCTTCAGAGATGGAAAAAAGTCTCGCCGAAGTCGCCATTTCATTCAGAAAACTGGAACGTGAGTGCTCTCGTTAGATGTGTCGTCAGCGGAAATAAAACGTGCAAATATATTAGTCTAAAACCACAGGGAGCATGCAATCTTGTTGAGTaagaagagagtaaataaaggaatgtctcctgttgtcatctCTTACGCGAAACTGCTACCTGCATACCGTGCGTAACACTGTAGCGCTAAACCTAGGCTTTTTAGCactgtgcaaaaaaaaattgcagaaaaaattttttttgcacagCCCGAAAAGACCTAGGTACAAGTTCAGCGCTACAATGCTACGCAGGACTTGTAGGTAGCGGTTTTCCATGTACGGTCGCGTAAGagatgacaacaggagacaTAGGTAGACTATTCATTCTCTTCATTCCCTTATTTACCCTCTTCCTACTCAATAAGATTGCTTGCTCCCTGTGCTAAGATATTCATAAAGAGAAATTTGATCGGATTGTACAATCCGGGAAAACACATCGTATTATTCCTTGGGAAATGATACCTTT

Protein

Uniprot

Uniprot term	Description
P48058	Glutamate receptor 4 OS=Homo sapiens OX=9606 GN=GRIA4 PE=1 SV=2
A0A2R8QF68	Glutamate receptor ionotropic, kainate 2 OS=Danio rerio OX=7955 GN=grik2 PE=3 SV=1
Q38PU5	Glutamate receptor 4 OS=Macaca fascicularis OX=9541 GN=GRIA4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF01094	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF07885	Ion_trans_2	Ion channel	Family	Interproscan
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR015683	Family	Ionotropic glutamate receptor	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR001828	Domain	Receptor, ligand binding region	Interproscan
IPR001508	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR013099	Domain	Potassium channel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008066	Molecular Function	glutamate receptor activity	Interproscan
GO:0035249	Biological Process	synaptic transmission, glutamatergic	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0050804	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0098839	Cellular Component	postsynaptic density membrane	Interproscan
GO:1904315	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05313	GRIN; glutamate receptor, ionotropic, invertebrate	-	Ion channels	ko04040	deepkoala