Gene detail

Detailed information of XP_020619548.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_279:585966...589989
NR annotation: XP_020619548.1, tripartite motif-containing protein 3-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020763889.1

GAAGTTCGTCAATTCGTTCGCACTTCATACACAGGGGTTGGGAGTTCCTAGCAAGGGAGGCACTCCTTAACGTAAGACATACAACTATATACCGTGCTAACAGGCATGGTGTTAATCTAGAGCCACTTTCGGTTTGAAATGTACACTGGATTAATTCATGAGACCACCAATACTGAAATTTTGTAGTCTGCTTACTAGTCTGAATCTAATATTGAACATattgacttagaaaaaataGCATATTAGTTTTACTACTGTACGAACACCTACTTTATAGTTCTTAAGTCACGAGGTCTTTTTTGTTCACCAGAGTTTTATCGCatgtcgccatgtttgtgtcgaAAACAAGAATGAGCGCCTCGACTCTTCTTTAATTTAGTAAGCGCCCCCGCTCTAGTGAGCGCCTTATTGTAATTATGAGCTACCAAAGGCAAATTAGTCCCCAGGGCGCTAAATAGAATCGTTCAAGTATGCTTATGTAAATGTAAGTAATCTACATCAAGCTAGAAAGTATAATCTCAAAATCGAGtttcatgaccgtgacggtgtttggatacctgatcttaattagcaaagAGTTTTACCATTTTATTCCTCCGTTTTCTCCCTAGGTTtagtttgaccacattttcaaacacctcgaagttcatcaaaaatactccgctacgcacGCATGGTATTTTCAACTCtattctcggtgtttggaaatatggtcaaacacagtctttcgtgtttgatatattacttaagaATCGGACTAGCCATAAAACTATGACCACCTCACAATAACCTGGCTTGCCAATcatacactacttacaatataacgcagttcctttttttcatttccctaatttattttattaataaacgTTATGGGTTGAGATCGATTGGGACCCGATAGCATTTTCATCGGTGGCAACCGAAAAACGTGTAGCTTTCGAAAACTCTTCTTAGTTAGTAACTATGCGAAGAAGAGAATGTCATTTTTTGTTGGGTCCAGCACTTAGTGTTAGAGCACATTACAAGTCTCGTTTCACCAGGTTTTTTTCATAACTGTTGTGCTTTTTAAGGTACATGTTCGAAACTGGAAGAATTGGTGGCCACATCTGTCATGTGTAAAGAGAAACATCACGAGAATGAGCCCCTCAATTATTATTGTCAGAACTGCAAAGTTTGCATTTGCGACAAGTGTGGACAAACGCGTCATGCAAATCACACCAAGGTGGGTATCAAGCAAGCCGCAGAGGAACAAAAACTAATGATGGCGGAGCTTGTGCAGGAAATGAAACGAAGGATTGCTGAGCACACGACACAAATGGAGGAAACAACAGAATTGTTgaggaaaaacagagaaaaaattgCTTCCGCTCGTAACAAAGTATCAACCACTGTCGAAGAACACATTCGAGTTTTAAAGGAGCACGAGATCGCCATGGTGACCAAGTTGGATGTTattgaaaaagaacaacaaagagATCACGCAACACAGTTAGAACACTTTCAGATATCTGCCACGCAACTGAAAATGTCTATGGAACATTGCGAAAGAATTTTACAAGGAAACAGCAGCGTTGAAATTCTTGAAGCGCAGCAGGGTGTCATGGAAAGGTGTAAAGGTCTCCtaaatgcaagaaaaatgaacatttatcaACCATCGCATGTTCAGTACAAGGCAAATGAAGAGGATATCCAGAATGTTAGACACGTGTTTCTGGGTGAAGTTATTGTTAGTACAACTGATCCTCTTCAATCAGTGGCGGAAGGGGAAGGCTTAAAAGAGGCAGAAGCTGGAAGAGAAGCTAGCCTGACAGTCACAACAAAGAATGCAGAGGGACAACAGTGTTATAATGAAATCGATCAGATTGTTGTAAAAGTTCACAGTCCGTCAGAACAGGACCTCGACACCGACATTAATGACAGCAAAGATGGTAAATATAGCATCACCTACACACCCGATTGTGATGGACATCATGACGTGGTGATTGAAGTAAATAGTCAACCGCTGACTGGTTGCCTAGGAAGTATTCACGTGAAGCCGCATCAATACGATGCCGTAGGGTCTTTTGGATCACGTGGTACAGCACAAGGAAAATTTGGTTACCCCTGCGATATTGCAATAAATGACAAAACAGGGAAAATTGCAGTAGCTGATTCTTCTAATGAAAGAGTACAACTCTTTAGTTCAGATGGAACCTATTTAAGAGAGTGTAGTCAGAAGGGACCTGCTGCTAAGAAACTTAAATACCCTACTTCAGTAGCATTCAACAGGTCTGGCGACGTCATCATCTGCGATTTTTGTATCTTGTGGTTCAATGAAAGCGGCCAGTTTATTAAAAGCATCTTCAACAAACAATTGATCAAACCAGGAAAGATGACCATTGCTTGTGATGACCGCATGCTGGTGTGTGACCGAGGTGACAACACGGTCAAAGTCCTCTCCCCTGACGGTACAGAGTTATTACAGTCCTTCAGGGCTCCGGATTGTGATGCGTACCCATGTGTAGCTTTACGTCATCAAGACATGTTCTATGTCTCCTATGGCTCAGCTCACTGCGTGAAGGTATTTAATAATGAAGGAGAATTTCTATATGACATTGGTACAGAAGTGTCCAGTGGGCTTCGATGTCCTGTGGGACTCGCCGTTGACAAGTTTAACAACTTGATAATCTGTGACAGTGCAAACGGCAATGTCCTAGTTTTTACACTGGAAGGAGAATTTCTACACTGGATCAAAGGAAAACCAACCGAACTTAAGCAACCTTGGGCTGTTGCTGTATCGTCAAACGGTGGACAATTGTTCATTACTgatatggtcaaacactgtgTGCATGTTTTTGAGTAAACAACTGTTTGAGCCTTTTCGATTTATTATATGTATGGAAACTTGGAGTAGTTTTGTATTGGTTTTGGGGTGCGGCTTTTCAAAAGCTCGGTCAAGAAACATTCTTCGGCCGAATTTTCTATTTACAGACTACACGATAATAACACATATTACCAATAGTTGAATTTCTCTAAAAGGTTAAGTTTACTGGTATAGCGATATAGtggtatatttctttttaaatacgGTTGATTGTCACGAAGTGTAGTCAGaaatagtcgtgcgtttttgtcatgagcccctggTTCGGGggattgggcaaccactccctacCTAATGCAAACTTGCACAGAAATcctaaaaacaacaatgaatgTTTCGTGCGTAGGACCACAATTCACTTCAAAATAGTTGGTAATTACTTTGAAAGGTATGTGGAGCTCTTCATTACTACGATCGATTAGCTACGCTGAGAAATTGTAAAAGAGAACCCAGTCCCTTAATTAGTTACTGTTTAACAGATCATTGCTTACTGTCATAAAAGGCAAATTAATTCATTAGTTGCTAACGAATTCACTTCACTTGACTGATGTCAATATATTCACTTGTGTTGAGTTAGGCAGGGGTAATAAACGGTAGAAGTTTCCATTTATTTCCACACCTTGACAATCTCTTGTTTTTTCTTACTGTCACAAGGGAGAGGTTTGCAGGTTTTTAACCCTTTATATCGAAAAAATACCCTGTACCAGAATTACACTCCTATAGTCAGATTCCGCACTATTCAAAAACATGCAGTTCTATTTTTAATActaattttctcaattttgccAGAAAGAACTCGGCTACTTTAACAGCTATTGGAGTTCTGAATGGGTGCGAGGAACCAAAGAACCTTATCAGGACAActtaggggtggaccatttgattTTTGAAGGGGGTGGGttattaagaaaaacaaaatatatatccTGCAAGCttacttgtaccaaaaaaaacTCATGCACGTAACCGCTACCAAAAGAGCATTCAAAATGGCTTGAAAAATGGATCTCGTCTGTAAACAGGGGCAATTTTGATGACACTAAACTGAGTTTTTAAAGCGCAGGTCACatgtcattatttatttatcgagCTAGTAACATAAACAAGACGAGTCCAATGATTGTTAACATTGTTGAAAACCAAATTTTGGTTTATTACAAT

Protein

Uniprot

Uniprot term	Description
D2GXS7	Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca OX=9646 GN=TRIM2 PE=3 SV=1
A4IF63	Tripartite motif-containing protein 2 OS=Bos taurus OX=9913 GN=TRIM2 PE=2 SV=1
F7H9X2	Tripartite motif-containing protein 2 OS=Callithrix jacchus OX=9483 GN=TRIM2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan