Gene detail

Detailed information of XP_020619855.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_282:594319...613179
NR annotation: XP_020619855.1, kinesin light chain 3-like isoform X3 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020764196.1

CCAAAACCGCAGTAACGGGAAGTATGCTACATATTGCGTGATGAGCCGAAACTTGATCTTCCGCATACGGAGCTCCCACAGATCTCTCTGGGCGTCGAAATAGCGTCTGCCGGAGGAATTAATCACACGTTCTAAAAAAAGAGTTGAAGTTAAAATAAGAATTTGGTGGATTACAAAACGATTGGAAAACAAACAACGCCATCGAAGTGTTGTTGGTTCTGTACTGCGAGCGTCGTTGAGGACTTAAGTGGGTATTTCAAATCGATTGTTGTGAGTTATTGCCTGGAGTTCTAGCAGCTGGATTCAGCCAGTGCTGCTTAGTAGTTTATGGTGTTTTTAAGTTTCTCCAGTCTTCCAGTTTGGTAGGGATTCGTCTTGAGCCAAAAACTGCGAATTTAGGAGAAAAAAGGAACTTAATGTGAATTATTTTAAGCTGCAAAGAGAAGACAGTTAAGAAATAACTTTCAGTGCTTCATTGGCACTTCCGGCCAACTACATGGCACAGGGAGCTGCAGACATCGATGAAATTTCTCCCTTCCGCTTCTCACAGCAAGCTGCGCCTAGAACAGCACCCGCTGATCCAGTACCAGAAGGAACAGTAACAGGAGAAGTCTCTGGTGTTACTTCAAGAACACATTACAACAGAGACTCCAGTGGAGTGAGAAGTGGTCCAAAACGGAAAAGCCGTGAACGAGGTATGTTGTCTTGGAAGATTCACTGTGTTAGTGCCACCAGCAGAAACTCAGAGGAGCAAGATCCTCAAGAACAAAGTGAAAGGGTGAACAGATACATGGCACAGACGGCTGTTGACGTGGTCATGAGGGGAACATTTGATCTCTCCTCTCTTGAAGGACTAGAAGCTTATCACGCATACTTAGTAGGAAAACTTTATCTATGGAATGTAACCTTTGAGAGGAGTAGCATCAAAACAACCGTCAAGTGCCGTAGCCTGGAGATTCTTGAAGGCCTGTGGGAGGATTATTGCTCTGGTCGCCTCAATGCAGAAGCCGAGAAGTGCCTCATTACAGAGAAGGTTAAGGACGCGCTTGGTATGGAGACTATAAAGTTAGTAACCACTATGATGGAAGAAGACTACTTGGCTTGCAAATTgtctttaatggaagtttcagGTTCTTCTGAAGAAGTACCACAACTTGCGCTCAATATGGCTGACCCACAGCAAACTAAGGAGTACTTTGAACGTGCTCTAGACATACAGCTGGAAAAGCTTGGGCCCGAGCATATTGACGTTGCGACTACGTACAACAACTTGGGTCTTGTACAGCGTGACATGGGCAACCTGCAGCAGGCCAAGGAGTATCATGAACGTGCTCTAGACATTGCACTGAAAAAGCTTGGGCTCGAGCATACTCACGTTGCGGCTACGTACTACAACTTGGGTCTTGTACAGCATCACATGGGCAACCTGCAGCAGGCCAAGGGGTATTATGAACGTGCTCTAGACATAAGACTGAAAACGCTTGGGCCCGAGCATACTGACGTTGCGACTACGTACAACAACCTGGGTGTTGTACAGCATGACATGGGCAACCTGCAGCAGGCCAAGGAGTATTATGAACGTGCTCTAGACATAGGACTGAAAAAGCTTGGGCCCGAGCATACTCACTTTGCGACTACGTACAACAACTTGGGTGTTGTACAGCATGACATGGGCAACCTGCAGCAGGCCAAGGAGTATCATGAACGTGCTCTAGACATTAGACTGAAAAAGCTTGGGCCCGAGCATACTGACGTTGCGACTATGTACTACAACTTGGGTGTTGTACAGAATGACATGGGCAACCTGCAGCAGGCCAAGGAGTATTATGAACGTGCTCTAGACATTAGACTGAAAAAGCTTGGGCCCGAGCATACTGACGTTGCGACTATGTACTACAACTTGGGTCTTGTACAGCATGACATGGGCAACCTGCAGCAGGCCAAGGAGTATTATGAACGTGCTCTAGACATAGGACTGAAAAAGCTTGGGCCCGAGCATACTGACGTTGCGACTACGTACTACAACTTGGGTCTTGTACAGCATGACATGGGCAACCTGCAGCAGGCCAAGGAGTATTATGAACGTGCTCTAGACATAAGACTGAAAACGCTTGGGCCCGGGCATATTGACGTTGCGCGTTTGTACATTAAGTTGGGTGCTGTACAGCGTGACATGGGCAATCTGCAGCAGGCCGCGGAGTATTATTTGCTCGCCGAAGACGTTAGGCTTAAACAATTTGGAACCGAGCATATAGACGTTGCGCCTTCTCACATTAACTTGGGTGATGTATAACGTGACCTGGGTAGCCTGCAGCAGGCATTGTAAAACTGATCCGCAGCTGAAAAAGCTCCGAGCATGTtgacggcaacgaaaacgtcgcTTAACAACAGTTTTAATGAGCTAAACAacggctgtgcacgtgcgttaaaattcttcgtacatttctttaccgtcctattccaaacaagaacgtgaaataacca

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25806	APPBP2; amyloid protein-binding protein 2	-	Ubiquitin system	ko04121	deepkoala