Gene detail

Detailed information of XP_020619967.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2840:468021...470309
NR annotation: XP_020619967.1, zinc finger protein 136-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020764308.1

atgatgatgataataataataataaataattaacaaattatttactttGACCATTTAATACAAAGATAAAAAGTCGAGTCTACTTTCAAGCTTAGTGGCCAACAAAGCCAGTAAGCACACATCTTCTACTTCTTTTGCTTGAGGCAACTAGGTGTATTTCCAGTCCCCTATGGATGAGATTTTTGTCGATTGCAATGATAAACGTCAGCTTTTAAAGTGGCTAGGTCATTGTTATTCAGATGATTCAATCAACTGAATCAGAGCCCCTGGCATATAAATAGGCAAGATTGATTTCTGgatgttatttattatataattttgtCATGCAAGTGAGTTTAACTTGACAAACACTGGgctattattttcagttttccctGTTGTAATCCATCTTAATCTTCTCCAGTTTTGCCCGTCCATGCCCCTATTTGGTTTTTccatgtttcttttgagttctACGGTCTTGAGCTGTTATTCTCATACTATTACCAGCTGATCAGTGCTAAGCCTAAAAGTTGGATGACCTGGCCCTGTTAATTCCtggtacccatttttacacctggttaaagaaaggcactgtgagactgACAGGAAACTGTTTTGTCCAAACATATGACACAATGATCCAGAGTCCAGAAAACAATCATCACATTGCAAGCGACATGAACGAATTCACACAGGAGGGAAGCCGTTTACatgcaaacattgtaaaacGAGCTTTAGCCGGTCATCAACTTGCACTGaaggaacatgaacgaactcacacaggagagaagccatatacatgcaagtactgtaaaaagtgctttagccaGCTATCACCTTGCAAGTggcatgaacgaactcacacaggagtggAACCGTATACATGCCGGCATTGCAAAAAGGGCTTTAGACAATCATCGATTTGCAAGacacatgaacgaactcacacaggagagaggCCGTACatatgcaagcattgtaaaaagttgTTCGGCCGATCGTCAGTTTGCAAGGtgcatgaacgaactcacacaggactGAAACCGTATACATGCCAGCATTGTAAAAAGGGCTTTAGACAATCATCGATTTGCAAGAGatatgaacgaactcacacaggagagaagccgtatacatgcaaatattgtaaaaagagCTTTAGCCGATTATCAAATTGCAAGagacatgaacgaactcacacaggagagaagccgtatacatgcaagcattgtaaaaagtccTTTACAAGCTCATCATATTGCGAGCGACATGAACAAAAACACGCGATAGACCGTTTTTTAAAACGAAAGCAGCATGATCAGTATCTAAATCTAAGAAGTAATCTTCAGGAACCAACAACAACTCACGGTGACAAGAAGTCTCGTATGTAATTTTCCGAGACTAAAGAAAATTTAAGCCAAGTTGAAAGCCTCACCAGTTGGATTTGTCAGAAGGAATTAAGCAGCGAGACATGTCTCATCCAACATTACGATGAACATATGAGACAATAACGACACTTATATAAACCTTATCAATCTTTAAGCTATAAACCTTGGCCTTCCCTTTTTTCTGCTCGTTGAACGTTCACTACGATAAAATTTGTTCTGTTCAAGTTAGTGCTTGAAGAAATTCGACTAGCGTTTGCGCGATTTCTCTAAGAGTGTTCAGTAATAGCGGTAGAAAATTGAAACTTCTCTGAACCTGCATTTAACCAGACATTCAGAGAAGAGGCCCAGTATGTGATCCATTTTTgctgaaaacaatttaatttaagttCCATTAATAATATTTCAGGTTGTAATAAGCTTAATGCATAGAGCTACAATGTAGATTCAGTGTAATCACGACATGCGAGGTATCTTCAAGAATCGCACAGGAGTTAAGCCGTACAGAAGCAAGATGATCATAAAAAGAGCTTTTGCCAGTCAACAATTTGGAAACAAGGTGAAGGAAGACATGCAATAGACAGTTCTTTAAAATGAGAGCAACAAGATCAGTACCTTAAACTAACAAGGCACCTTCATGAGCCAACAACAACTCGCCGTGGCAAAAAAGTCTCGTATGCTGTTTTCTTTGACAGAAGAAACTTGGAGCGAAGTTGAAAGCCTGACCTGTTGGATTCGTTAGAAAGAAAGTTAGTAGCGAGGCATGTATCCTTCGACTTTACAATTATCACCTCAATGGTCATATGACATAAAAACGACGCTTATGTAAACCTTATCATTCGTTAAGCTTTAAACCTCCCTCTTTGTATTTTTCTCTCGCTGTAGTTTCACCACGTCACAATCTGGTCTGTTAAAGTTTATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050329	Family	GLI C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19818	ZINC FINGER PROTEIN ZIC AND GLI	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan