Gene detail

Detailed information of XP_020620135.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2845:636130...655227
NR annotation: XP_020620135.1, FYVE and coiled-coil domain-containing protein 1-like, partial [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020764476.1

TTAATTCAACTTCCCTTTTTTCAAAGGTCCCATTGTCGGACATGTTCTGCAGCAGTGTGTGTTACTTGTCATGTGGTAGTTAATAATGCTATCAagGTGTGTACAAGATGTCTTCTTAAACAAAAAGAGGATGAGCTGAGTACACAGAAAGCTCTCTCAGCTATTGAAGAGGCCAGAACTGGAAGAGGTGATTCCATGTCTTCTGTGAGATCAGATACATTTGTAGTTGTACCTTCAGTCAGTCGTCTAACCCCAGAGCAAAAGAAAGAGTCCTTGTTTGAAGCTGCCAAGATAgGGGATCACTACTCAATGGTTACTCTTCTGAATGACAATGTTGATGTGAATATTAGGGATACAGACAAGAACACTCCTTTATTTTTTGCGGCAGAAGGTGGACATCTTCCATGTGTGGCTCTTTTAATGGAACGGAATGCAGATGTAACAGCAATAAACAATAAATCTTGGACCCCTCTTCATGCATTAGCTTGGAAAGGTTCAAGTGATAGCCATGTCGAGAGTGGTGAACTTCTTATTCAGATGGGTGTTCCCATTTTTGCCTTGACAGATACAGTAGAGACTGCTGCTGACCTTGCAGCTCGTTCTGGTGGCAAGCAGGAACTGGTGCAGCTATTGAGAGCTGTAGAAGTGGATGTTGCAGTACAGAAATTACAAGAGAAGCTACAAAGCCCTTCAGGTTTGCCGACCAAGGATCCAATGTTGAAGCTGTACGTTGCTACAGTGGTGAGACATATCACAGAAAACATGCCGCCGGACAGTCCTAAGACGAAAGGCAATGAGGTAAAGAGTCTACGATCCTTAAAGACACCAGAGCTGATGAGAAGGGTTCAAGATATGACTAAATCCCTCGATAGGGGACTCCGTAAGCACAACTCCTGTGAAGAACTCAGATCTGAAACCACTGttccagGCACCTGGCTTTTCGGTACCAGTTCCCCATCAGCCAACATTCCAAGAGCTGACGTTGAACCAGTTATCAGACCGGATTTGTTACCTTCAGTGATGGTCAACCCATCAAGACTCGAGGAGAGATTGGTAAAATGTCAAGCGGAGAAAGACGACGCAGAACAGCGCTGTAAAAGACTAATGCAGTCTATAGCTAGTGCAGCTGAGgcGCACGAAAAGGAGGTCTCAAGATTGCAGCAGGAAATAGATATTGCGAGAGAACAGAAGGACATTGCTATTAAACGgTGCGAAGCCACgtttgtcaacaaaatggcgAAAATTCGGCAAGAAACGGAGGCAGCTATCCATGAGGCAAACGCACGGCTTAATCAAGCAGAGAGGGACCGGGCCGAGGTACTCCATCTTCAGAATACATTCAGATTATCGTGGGTCCCGGATGAGCTTGTCAACTACTGTTCCAACAACAAGTGTCGAGCACCCTTCACACAGacaAGAAGACGCCATCACTGTCGATGTTGCGGTCGTGTTTTCTGTCACAACTGCACGGATCAGTCAACGCCaatTCCAGCCTTTGGTTATTATCAACTTGTAAGAGTGTGTAATCCCTGCTACGCTCTGATAGATGACATGTTCTGTGAGGAGCCAGTTGTTTCTACAGGCGCCACGTGACAAGAGGGTTGGACAGCGTCGAATAACTTGACTACCNCGTACTTAGATTCAAAATCAAACGGAAAACCAAGTATCGTGCTCGAAAATCTTCGTAACAATACTAGATGAGCTTCCGAGCCTTATTCTCGAATCACAGTACTTGAGAGTACTAGCTGCTTTAACTTGACATCATACGTTTACGTTATTAGTTGCCTAGCAACGTCTTGGGTAAATACCACCGCTTCAGTTGGTTCTTCAGACTGAATCATATTCAAAACAGCAACTTGTTTGGGACCCAGCTTTTATTATAAATAAGGACGAGAGAATGGATGTGTAAAAATTGGAAAGATGCTCTAAGAGCACAAACTCTAAGTTTATTATTCCATCAAGTTTCACTCAACACGTTAGTCTTTGTAGTGTAGAGGTTTCAATTTAGGTAACACAACGGAATCAAGAATCGCGCAATTTGACATGAA

Protein

Uniprot

Uniprot term	Description
Q9TZD0	Lateral signaling target protein 2 OS=Caenorhabditis elegans OX=6239 GN=lst-2 PE=2 SV=2
A8XJZ8	Lateral signaling target protein 2 OS=Caenorhabditis briggsae OX=6238 GN=lst-2 PE=3 SV=1
Q96T51	RUN and FYVE domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RUFY1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF01363	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR000306	Domain	FYVE zinc finger	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23164	EARLY ENDOSOME ANTIGEN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01534	zntA; Zn2+/Cd2+-exporting ATPase	EC:7.2.2.12 EC:7.2.2.21	Enzymes with EC numbers	-	deepkoala