Gene detail

Detailed information of XP_020620547.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2857:1115422...1121015
NR annotation: XP_020620547.1, roquin-1-like [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q4VGL6	Roquin-1 OS=Mus musculus OX=10090 GN=Rc3h1 PE=1 SV=1
Q5TC82	Roquin-1 OS=Homo sapiens OX=9606 GN=RC3H1 PE=1 SV=1
P0C090	Roquin-2 OS=Mus musculus OX=10090 GN=Rc3h2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR052249	Family	Roquin domain-containing protein	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13139	RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0000288	Biological Process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0010494	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0035613	Molecular Function	RNA stem-loop binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan