Gene detail

Detailed information of XP_020620741.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2857:2622972...2643516
NR annotation: XP_020620741.1, glutamic acid-rich protein-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020765082.1

GATCAGTCAGATAAAACTCGTCGGAATGGTATGAACTTATGGCGGACAGTTGAGACGCGGGTGTGGACTGTTGAAGCGATTCGCTTCCTCCCTGCCACAGTTTTCTCCATCTGGTAATGCTATTGAACGAGAAAGCActaatttgaccattttgagtTTATAAATTGGCTCAGAGCTTTTGAGGTGATGGCGCGAATGAAGTCAAGGCCCCAACGCACAACGAAAAGGAAATCGCAAGAGCGCGGCGTTCGAGAAGGTTTACGAGCAGGGCGGAAAAGTCCGACTGCTAGTAAGCGTGTGAGACTGCATAGCCCGGAAGAACAGCCATCGACTTCttcgaagaaaggaaagaagaagaaagGCAGGCCTTCTCAGATACAAAAGAAAGATGCACATCTCCCCCCTGAATTACGCAGTGCAGGACTTTTGGCCCACATGCATATTCCAAAGGGAAAGTNCTTTGGACCATTTAATGGAAAAATCATGGACAGAAGAAAGTCTCCAGACAAAATGCACTTTTTTGTATCACAGGTGGAAGATAAAAACAGCAGAAACAGATCATTGAAGTTTTTCTACGCACACAAGAATGAGAAAGACAAATGTGGCTGGCTCAGTCGACTTCAGAGTGCAACATCAGAAGAACAACAGAATGTTGTGGCTTATAACTGTTCCACAGGGGTCTGCTTTGAAGCCCTTAAAGACATAGCGGCAGGGGAGGAGTTGATGGTGTTGTTTGATAAATCATTTAAAGGGTTAGAATATCCAGCTTATGTTGAAAGCATACCCGTCTCCTTCATCACAGATGAAAGAGGTGGACAGATAGCAGTGGTGCCACTCGATAAAGAGGTGGATCACACTAAAGTATATGTTAACcctaatgatgatgataatgatgataataatgaggAGGAGGGAGCTGGGAAGGCTGATGACAATGAAACAGCTGCACCTTTAGATGTAGAAGATGTGGAAATTATAGgaattgatgatgatgatgatgatgatgatgatgataaaagtGACTTcaatgttgatgatgatgatgatgagggtAATGACCATGTTGACGATGATGATGGCGGCGATggtgacaatgacgatgacagtgatgatgattactgtgatgatgaggatgaggatgactatgatgatgatgatgttgatgatgatgatgatgacatggATGACAGTGATTATGAGTTTATTCCTAAGAGTAACGTGAAGTTAGTGGTGGAGAATAAAAGCACCGATGATGATACTGTGATGGGAGAAGGGGATCATAGAGAAAAGCAGACAGTTCATCGCAAAAGAAAGCCCAACATCAAAGAAATAGCCATTGTTGATGCGGATAACGgttcagACACAACCAAATTCCAGTGTACCCACTGCCTGGAGGAGTTTATGCAAAAAGAGAAAGCTCTGCAACATAGTTCTTCCTTGGAATGCCTTTCAAGACAGTTCCGATGTGACACATGCACTCAAGAGTTCAGAAATGCTTTTGTACTCCAGAGGCACAGATGTGGAGGGAAGCCAAaGTGCAAGATTTGTGACGAAGGGTTTCAGGAGTGGAAACAATTACAAGATCACGAGAGTGCTCCACCAGAAGATCACCAACCAAAGTAACtcaagtttttctttaaattaggATACACTTAACGGCACGCTAACTTTTGTTACTCTGTGTCAAAATTCTAAGACCTGCCTAACGAATGGGCGATTCCAAAAATCGAACAACATTTTCCTCAGTTTGGCATACCATTTTTTCGTCCTCGACGTAGCATACCAAGCAGAGTTTCCTTTACGCAAGTCGCGTTAATTTCCTTCTGCAGGAAGGATACGGATTTAAAACGAAACTAATTCCTTGAGCGCCGGTTCAAAACATTGGACAAGACGCTGAAAGTTAAGaagggaccttaagcaaaccacgtCGGCAACGGCGAcgaaaacaccaccaaacaaaaggtttaatgagcaggtCAATAGCCGCGCACACTATGAATCTttgaacatttctttgctgtcctctgcaaaacaacaacgtgaaatgattaagttttgcgtattttggagaacgcgaacaacggctaatttttcgtattttcttttggaattgaatgctggcgttacatatttacaGCTCGAGCAATTTCTGAGACCAACAGACACTCTCAACAGATCTagataattgcgaaattcgaaggtaaaatgtaAGTTCAtgttttactaggcgttgtccttgGGGTCGCGTCTAATCTCAGTCGCATTTGTGCCCAGCTGGTCGTTACCCGTTGTTTTACTGGCGATATTAACTTGATATGCCACCGAAGTTTCAGTGCCAACGTTAAATGATATGTATTGGAACCTGTAAGGAGACTTGATATTTTAATCTTGGTTAGCAGTGCTTGAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21549	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24394	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan