Gene detail

Detailed information of XP_020620897.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2879:134319...140387
NR annotation: XP_020620897.1, golgin subfamily A member 6-like protein 6 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC110058586

ATGAATGACAGGCACAGGGATATCCTTCGCCGCCATTGGTCGACGCTTAGGAGGGACCTGGAACCGATGAAGCTTCTACCTAATTTGGTCAACGTGTTGGACGTCACGGATGAACAGGAAGTAAAGGTGAAAGCTACGAGAGAGGACAGGATTGACAAACTGTTAGACATCCTACCGAGGAGAGGGCCTACAGCCTTTGATGACTTCGTGAAGGCATTGCAGGAAGTTCAGCCATTTTTGGCTGCTCCATTGGTTCAAGAATCAGAAATGGAAGAGATTAAGACGGAACTAAATCGTGCTCGAACACACAGTGCAAGGCTTGGAGAGGAAGTTGATCTTATGAGAACAAGTTTAGAAAAAGAGCAACAGAAACACAAAAAGACGCGTAAAGAACTTGAAGAACTAAAAAGCCTCCATGAAACTCTAATGGCAAAGGGCGAGGAAGACAAGCAAAATATGCAGCTGAGGGTTGAAGAGCTAGAAACCATGATCAACCGACTGGAGGAGGAACTGTCAACCGAACGAAGCGACAAACTTGTCTTCACAGAGGAAACAGCACGGTTGAGAAAAATGTGCGATCAAATGGACGAGAAGTTACGTAGCTTTAAGGAAAGTTACGAAAAGGTCTCTCAAGAGAACAAAGAACTCGTGACAAAGTTGTCAAACTACAGAAACAATGTTTTGAACGAAAGAGTTAACCGTGATGCGGTGGGCTTCATTTCACGACATGGGGAACACGAAATGGTTGAAAAAATCCCGAATGTACTGTCTACTGATATTCCTTTTATCAAGGATGAGGATTTGGAGATAAAACCTCGGATACAAAAGAGCAGTGACTCCTTTTCAGCTGAACTGTTGGATGAAACTAGGAAAGATTTGGCGAGAGTAACGAAAGAACACGAGGAATTGAAAGAAAAGTACGAGCACTTAGAGAGACAGCTCGAGGACACTCTGGCGAGTTTGGAAAGACAACGAAGCGCCAGTTTGCATGATAGAGCGACATCACCAGGAGAACCAATACACTTGGAGTTTGAAGAAAATCAAGGGTGTCCGCGATGTGAAGCACTGGAAGAAGAGAATAACTTGTTAACAACGGAGAAAGATTTCTACAAAGGAGAGAAAGAGAAATTCGAGGACGAAGTTTCCAAGTTAAACAAAGAAATAAAAGAGCTCAGATCGGACCAATTAAGAGAGGAAAAAAACCTTCAAAAGGAAATACAAAGTATGCGAGAAGAACACGAAAACTTGTCACGAGATTTTGAAAAGGAGTTGCAAAAGATGTTGCGTGACGTGAATGGACAACGAGAGTCGGAAATGAAAACGTTACACGGGCAAAACGACGAATTGAACGATCAGATTAATAAACTGAAGTCGGAAATCCAAAAGATAATGGCGCAATTAAAGAAAGAAAAATCACAACAGGAGAAAATTCAAGAAGATTTTGCTAAGGTGAAAAAAAATTTAGCACGGGAAAAGAAGAAATTGAAGGAGACGAAGGAGGAACTAGAGACTGAGGTTAAAGCTAAGACAGACGCTTTGAAAGAACTGGATAAGCTAAAGAATGAACTTTGTAGCCAAGAGCACAAAAAATGCGAAGACATGGAGAGACTTCGCAAGGACTTCGCGGAACGTTGCAAGTGCGACTTGTTGAGAGAAGAAATCCAACGACTGAGGAGCATGACAGGACGTGTTTTAAACTACAGAAAGGACTTCGACAGACACGGTGTCATCTATGCCCTGGGAACAAATTTCGGTACCACCCTCTGGGTAAATCCCGGTAGCAACAGTGCCTCCCCGACAAGGATAATTGCCACGCGATCCTCTGACGAGCAAGGCGTGGCCAATGACCTGCTTGACAATCGCAGAGGCGGTACTTTAAGTGGCACAAAGGACGAAGATAGATCGTGGTGGTGTGTAGATTTGAGCGAAAAGTACGCCTTGTTTTTAACCCATTACACTTTACGACATGGACGGGACAACGGCATGTCAATTATTCGTAACTGGCGCCTCGAAGGGTCGCTTGATGGCCGCAGTTGGAAACTTCTGAAAAAGCACGAGAATGATCGCGGGCTTAAAGAACCTTTCCCATATTACACCGCGACCTGGTCAGTCGATGGGGACCTGGGAGCGTTTCGGTATTTTAGGATTTTTCAGACGGGAAAGAATTCATCTGGACGATTCAGTATCTTTCTCTCTGGTATTGAACTTTACGGAGTGCTCATTGAACTAAGCAGTTGA

Transcript

rna-XM_020765238.1

GGTAATTATACGCTATAGGTAAGGTTATAATGTCttgaaaacacttttcaaagaATGGTGAATTGTCTTCCAAAACTACATTGCTCTGATGTGTTTTAGCGCTATTATTACATCATCTCAGGGCAGTTTCTTTACAAATAGTTTACCATCCAAGATATAAATTCATTTGCAGACGTCTGTTGGGAAACAAAGCTGGCTCCAAGGCCCATCTTCGTCCTCGTTTAGAACCGACTGTCCACTTGAGGTCAAGCCGTGGATATTATCACGAATCATTTTCACCAGATGAGGAATCCACTCTTCGATTCTTTGTTGGAGCCTTAAAACTGGTACTGAATTGAAACAAGATGAATGACAGGCACAGGGATATCCTTCGCCGCCATTGGTCGACGCTTAGGAGGGACCTGGAACCGATGAAGCTTCTACCTAATTTGGTCAACGTGTTGGACGTCACGGATGAACAGGAAGTAAAGGTGAAAGCTACGAGAGAGGACAGGATTGACAAACTGTTAGACATCCTACCGAGGAGAGGGCCTACAGCCTTTGATGACTTCGTGAAGGCATTGCAGGAAGTTCAGCCATTTTTGGCTGCTCCATTGGTTCAAGAATCAGaaatggaagagaTTAAGACGGAACTAAATCGTGCTCGAACACACAGTGCAAGGCTTGGAGAGGAAGTTGATCTTATGAGAACAAGTTTAGAAAAAGAGcaacagaaacacaaaaagaCGCGTAAAGAACTTGAAGAACTAAAAAGCCTCCATGAAACTCTAATGGCAAAGGGCGAGGAAGACAAGCAAAATATGCAGCTGAGGGTTGAAGAGCTAGAAACCATGATCAACCGACTGGAGGAGGAACTGTCAACCGAACGAAGCGACAAACTTGTCTTCACAGAGGAAACAGCACGGTTGAGAAAAATGTGCGATCAAATGGACGAGAAGTTACGTAGCTTTAAGGAAAGTTACGAAAAGGTCTCTCAAGAGAACAAAGAACTCGTGACAAAGTTGTCAAACTACAGAAACAATGTTTTGAACGAAAGAGTTAACCGTGATGCGGTGGGCTTCATTTCACGACATGGGGAACACGAAATGGTTGAAAAAATCCCGAATGTACTGTCTACTGATATTCCTTTTATCAAGGATGAGGATTTGGAGATAAAACCTCGGATACAAAAGAGCAGTGACTCCTTTTCAGCTGAACTGTTGGATGAAACTAGGAAAGATTTGGCGAGAGTAACGAAAGAACACGAGGAATTGAAAGAAAAGTACGAGCACTTAGAGAGACAGCTCGAGGACACTCTGGCGAGTTTGGAAAGACAACGAAGCGCCAGTTTGCATGATAGAGCGACATCACCAGGAGAACCAATACACTTGGAGTTTGAAGaaaatcaAGGGTGTCCGCGATGTGAAGCACTGGAAGAAGAGAATAACTTGTTAACAACGGAGAAAGATTTCTACAAAggagagaaagagaaattcGAGGACGAAGTTTccaagttaaacaaagaaataaaagagcTCAGATCGGACCAAttaagagaggaaaaaaacCTTCAAAAGGAAATACAAAGTATGCGAGAAGAACACGAAAACTTGTCAcgagattttgaaaaggagtTGCAAAAGATGTTGCGTGACGTGAATGGACAACGAGAGTCGGAAATGAAAACGTTACACGGGCAAAACGACGAATTGAACGATCAGATTAATAAACTGAAGTCGGAAATCCAAAAGATAATGGCgcaattaaagaaagaaaaatcacaaCAGGAGAAAATTCAAGAAGATTTTGctaaggtgaaaaaaaatttagcacgggaaaagaagaaattgaagGAGACGAAGGAGGAACTAGAGACTGAGGTTAAAGCTAAGACAGACGCTTTGAAAGAACTGGATAAGCTAAAGAATGAACTTTGTAGCCAAGAGCACAAAAAATGCGAAGACATGGAGAGACTTCGCAAGGACTTCGCGGAACGTTGCAAGTGCGACTTGTTGAGAGAAGAAATCCAACGACTGAGGAGCATGACAGGACGTGTTTTAAACTACAGAAAGGACTTCGACAGACACGGTGTCATCTATGCCCTGGGAACAAATTTCGGTACCACCCTCTGGGTAAATCCCGGTAGCAACAGTGCCTCCCCGACAAGGATAATTGCCACGCGATCCTCTGACGAGCAAGGCGTGGCCAATGACCTGCTTGACAATCGCAGAGGCGGTACTTTAAGTGGCACAAAGGACGAAGATAGATCGTGGTGGTGTGTAGATTTGAGCGAAAAGTACGCCTTGTTTTTAACCCATTACACTTTACGACATGGACGGGACAACGGCATGTCAATTATTCGTAACTGGCGCCTCGAAGGGTCGCTTGATGGCCGCAGTTGGAAACTTCTGAAAAAGCACGAGAATGATCGCGGGCTTAAAGAACCTTTCCCATATTACACCGCGACCTGGTCAGTCGATGGGGACCTGGGAGCGTTTCGGTATTTTAGGATTTTTCAGACGGGAAAGAATTCATCTGGACGATTCAGTATCTTTCTCTCTGGTATTGAACTTTACGGAGTGCTCATTGAACTAAGCAGTTGACCTGTGTTAGCTTCCCTTTACTCCATTCTCTGTTTCTCTCATAATGAACGAGGTGCTCAGTCACAATAACTTTA

Protein

Uniprot

Uniprot term	Description
V6CLA2	E3 ubiquitin-protein ligase hecd-1 OS=Caenorhabditis elegans OX=6239 GN=hecd-1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00619	CARD	Caspase recruitment domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001315	Domain	CARD domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47457	OS05G0345500 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan