Gene detail

Detailed information of XP_020620910.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1194:18380...28273
NR annotation: XP_020620910.1, GTP-binding protein YPT1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020765251.1

acatggcggacgtcGACTACGTCTTCAAGGTTCTCGTACTTGGAGACAGTTCTGTTGGAAAATCAAGTCTTATTAAGAGATTTCACTCAAATGTGTTTGATCAAAGACTTCCAACGACTATTGGAGTCGACTTTTTTATCCATGACCTTGAAGTAGACGGGAAAAAAGTCAAGCTACAACTCTGGGACACTGCAGGGGAGGAGAGATTCAGGCAAAATGGATTGACCAATTCATATTACAGGGGTGCCAATGGTGCACTTGTAGTGTTTTCTCTGACGTCTTACAAATCATTTGAAAGTGTGAAAAATCTCTGGTTAGAAGAGTTTTACCACAAAAGTGGCTCAGATACAATTACCATTCTTGTGGCCAACAAATGTGACTTGGAAGATAAAAGAGAAGTGGATGAAGCTGACATTCGGGAATTTGCAGAATTAAATTCCATGTGTTGGCTAGAAACAAGCGCCAAGGACTGCACTAATGTACAAGAGGCTTTTGAAACAATGGCATACAAACTGTGCGAGAGTCACGAGCAATATCTGTCATTCGACTCAGAACACAGCAGTGGTCCAGGAAGCTTTACTCTTCATGGTGCTTATGGTGTGCCACGACAACCAACCAGTAGTGCCAGCTATTGTGGTTGTACCTCAACATAACAATGCCTGTTGTACAGTGTTTTCATCAgtaaggctggttttcattagcAGTTAGCATAACCCAGCATAAACTTGATATAAGCATATTAAGCACAAAACTTGGTGGCAGAGTTGTGTGAAAGTCTATGCTACATAATTATCTTTCTCTACAGCATGACCAGTTTTTAAAAGGCTTGCTTCTGCAAACCGTGACCTGAGAATGAGcacaagaacaaaacatttctCACAGTTTATGTTTACTACAAGTCAACAAATGTCCTTCTTATGTGTACCATATGCTTttaatgaaaaccagccttaaaagttataaaaaatgCATTGTTTTAATCCTCACAAGTTTACAGAATTTTTTCAATAACaagacgatttttttttaattttaaattttttgttttataattttggAATAGGTAGAAAAAATTTCAGGGAAAAAAGTTTTCCAAACTTTTATCCCATCAATTCTCTTTAAATAGACACTACTGACTATCAAGTGTCCAATGGCTGTAAAAGGTGTTCATCTTAAGCATAGTTAGGTTACAGTACAATGAAAAACATTGCAATAGATTCCTTGAGAGACTCAGTCTAGTAATAGGTGGCCAATAGGCTTAAGCAcaaatgtaacattttaaaaaaaacgacTGCAGCACAGTAGAGACCATGCTTGTTCTTTTATAGTCTCGTTGTtagaattttacaattttattacaTTACTGTACATACCACTATGTTGGTGTACAGTTTCTTGTTCAGGGAAATCGACATGTAGAAGCCTGAACAATTATTTGAACAAATCATTATTTAAACAGGTTTGCCAACACACAACAGCTTACTTCATAATACATCTCAAGGGATTAATAATATGTGAATCACTCTTATAAAGTATGGCTGGGTTTACATCGACACGCAAGCCATGAACACTTAACATTTTTTGGTGCTTATATGGTTGATGGTTTCACATTCTAAGAGGACTAATTTTAACGTTTTAGTTGAAGAGCCCTcacagaaaggaaaaaatgcacaaaaatgtTAAGAGTTGTGTACTTGCTGTTAGTAATAAAAATTagctttgttcattttatttgccTGAAACTTCAGTGCTTATGACAAGTAGAAGAAGGGCACCATTATATAGCTCTTAACAAAAATTCTACACAACTTGAATGATATTGATGATAATCTTTATTGCTCACTgatgtgattttattttatacagCTAGGATGATCAGTGAAGTTAGCTCATACTTAGGATGAATGCACACATACAGTAGTAAAACTAGTATAGACCTCTTAAATATTGAAAGATTAAATTAATAGGGGAAAAACAAAGCTTGCAAGCTCCATTAACTATCTCTGTTTACATTACTGCTTCTTTCTCCATGCAGTTGTTATTCAGTAATATGAATGTAAACGTTATTGTAGCTATTATGCttgactacatgtatgtatcaaAAAGTGCAAGCTGTGTCTAAATGAGAGTAACTTACAGTGACAAGTAGTTAGAGATGTACTGAACAGTATGAGCTACAGGTGATATCAGCAATTGCATTACTGAACACTGCTGACACAAATTGACTTGAACTAACTGCTTATTGTATTGACCGCATTGCTAGGTGCGACTTATACTTTTGGAAATAAGAACAGACATTCCTAAACTGACAAGGGCAAACAAATTGCCACACATTAGAAATTGGGTACGGTATCCATAATGACCTCAGTCAACAAAATAGACAAACTATGGACTCATCTTTGATCTAGAGTAGAAACAGACCAAATGTGACTACAGATGGATTGAACCTTAGCACAACTTTGTAGTATTTTATAGACTAAATAAATATCTCTGGTATTCATCCA

Protein

Uniprot

Uniprot term	Description
P01123	GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YPT1 PE=1 SV=2
P22125	Ras-related protein ORAB-1 OS=Diplobatis ommata OX=1870830 PE=2 SV=1
P62822	Ras-related protein Rab-1A OS=Canis lupus familiaris OX=9615 GN=RAB1A PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan