Gene detail

Detailed information of XP_020621171.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2900:87442...92476
NR annotation: XP_020621171.1, homeobox protein ceh-19-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020765512.1

gagaaaCACAAATTGACATGCaggcttaatttaatttatgaaCCACAGCAGAGACTGTGAGGCGAAATGCGCATATATTCGTTTGATTGATTACAACAACCTGAAAATTGCGGAAGGGTCCTGCAGGTTCAGTGTTTTCATGTTAACCCTTTAGAAACATGTAGCTAATGTTCTTCGTTCAATAACATTGTCCGAAATGGTTTATGGTTACCGTGCTTGCAAATTCTTgatacaaagaaatgtatgatcGGAACTCAATAATGCGCTATACCACATTATTTAGGTGTAAATCATGAGATATTTGGATCATGTCAGCCGCTAAAAATCAGCGGTTCACCTTGATATGATTAGTACTTCTGTTCATGTGTTGCTTGTCTGGTACTGAGCAGTTCTACAAAGTCAGCAACACTGTATGCGAAGATCAAATACGACCAAATACACATAGCAAAATGTCTCGCCTGCAAAACCTCTATCAAAACGGAAAACAGCCAAATGGGGAGAACTCTGCAAAAAAGGATAACcagaaaaataatcactttcCGTGTTGCTTTCCGTAACTAAGCCAGCCAGACAGACGGAAAAACACGGACACTTCGTCTGTTGCCATTGCTACTCCTAACGATAATAATAGATTGGAAACTAAGGGGGATAATTTGCACCAATGTGATCATCATTTAAATCATGGCCTCGAGGTTTATTGCATGTCCATGGAGGTAGAACACATCAGAGTGTACTGACTTTCATTACAAAACCCTCAGTTTTACTAATGGCAttcaaaagattaaaaatactgTGACAAATTGTAGTTCACTCCCTAGCAAGGAAGGGAAGCTTGTATAAGGCAAATGCACCTCCCTAAATATTATAAAAACTATCAGTTGCAAAACTTCAATCAAGAGATGTCAGAGATTGTAACAAGCAATACCTTGATACTTTCAAGCTTGGTAATTCCAACGTACTTGTAACGTTCGCACATTGTACTAAAAATTATCgaaataacaatttatttcagtgcAAAAATATTTGCGTGTTTCTAGACAGGAATTTTGTGATAAGGTTTCTATACTAAGCTATCTATTGTCCGTGATGGGTGAAACCCTATCGTTGTCTACAAACTTCACTCACTTCATAGCGATCTCCACCCTTTTTTCGCAGTATGTGGCTTCCAAACAACGTCAGCAGTTCCAAAAATAAGATCTAAATACCCATTTACCAAGCCGCTGCGGGCGTGACGGCGTGAATGATGTAAATCTTGAAACCAAACGTTAAGTATGTGAAAACTCCTGCGGTAATGCGTGAAAAGGAAATGTCCAGGTGTTTATTACGATCCAATGGCTAATTATGGAGTTAGTATTTTGTGTAGTTCACAGCTGATTCGATTATCCATCACGGAAGGCAGTATATAGGCAgtcaaacaaaatgatcttttcCTAAGGGTAAACAAACTGACAAGAGTAAAGCAAAGGGTTTACCCAGTAATGCATCGCAAAATTCTGCTTATTTTAcgactttattttatttttggtttaaaattccTCAAAATGTTACATTGTTGGCGTGAAACTGGATTTGTTCATACGCGAAACTTTCCTTCCTCTTGTAGTATCCGTATCGGTCGATCCAGATTTGCAGTGTCCGTCGCGACTAACAGCTAGTCAAATGATCAGAATGGATTTTGTTTAACCGTTAGTTAGAAAGATTTCCAACAGTTGGATTTGAGAATGTATTGATCAAGAAATTGACAAATAAATTTGAGAGCTTTGACTGAAGTCACTAATTTTAAGCTGTATATTTTTCGTGCACAGTTATTCTAAGAGACCATTCAGATCGGACGCATTTGTATTGTATTCCTTGTTAGGTTGACGACAGGATGACGAATAAAAGGAAACCAGGTTTGTGGAAATCCCGTCGTAATAAAATATGGCCAATTAAGGTCGAATGACTGCGAACACACCCTAAtaaaaaatgctttcttttcatttttatactttttaagATGCAATAAGTAATAAGAATAACAACATTTAGTTTAGTTGATTAATAAATTAATGGCTGAAAAGGAGAAACTTGCTCGGATCATCTCCTGTTTTCTGCGTGGATTTGCTTTTCTCGCCGCAATTTCCGGTCAAAATATTAGGGACTCGGTTCTACTCGTCTTGCCTCTTCCTGTCGGAAATTACGATAACCGGAAGTAAACAACGACAGACACTTCCAGCTGAAATTAATTCTGACTACTCAACAGGCTCTGGAAAGGATACAAATACCAAATTACTGACTTCAGAACTAGTCGGTTAAGTTTTCCGCGAGGGTATCGGTGACTCTACTCAAAGGAGTCAGAACagtattttggtttttgtttagCAGCAATACTTCTCAGAACGGCTGATCTCACGTGTCCTGCATTGATTGATAGGATTAATTAGTCTTTAGTACGCAGGCGTCAATACTTAGAGTGGAGACCTTTTGACGGGGTGCAGTGTCTGGATCGACCGCCCAAGCACTTGTCTTCTTAAAACCAAACCAGTGAATCGTTCCGACATGGACTTCATAAAGAGTTCTCAGTCTCTCTTCTGCACTCGGTCTTCCAGCAGGGATTCGTTTTCCATCAAGAATATTTTGAACCTTCGAGATGAAAGAGACATGGTAGAGTTTCCTCGATTTTCAAGTGAAGGTctagaaaatggaaaatgttcGATGACGAAACCCATTGTGGCTCCAACGCCTTATGCTGTGAGCTCGCCGCCATTGCTGTACCCTTGTGCTTGCTTAGGCCTACCACTGTATGGCCCTTTAAACTGGCCAACGATTGCTACAGGGCAGGACATTCCCTCCTGGGTCTCCAACTCGCGCTTTACACCGGGGCATGAATTCTTCGCTAGTTTTGCGCCATACAACGTGAATCTCCGAAGACGAAGACGACTTCCAAGAAAGAAGAAGCAACGGCCATTGTTTTCACAACAACAAGTCCAAACAATGGAAGACGAGTTCACCAAGCATCGCTACATCAACGAAAGCAAACGTGCTGAGCTGTCCTCAGAGTTAGGCCTGACAGAAACCCAAGTAAAAACATGGTTCCAAAATAGACGAACAAAGtggagaaaagaaataaaggacGAAGTGGCGACAACAGTGGCCcaagcaaacaaacatgaaATCACTAGAAAGTTTGTCAGGTAAACGTTCTTCAGATGATGAATCGTTCTTAGAGTCTCCAAGTCCTAAAATCAATGCATTTGATCAGTGTTTGCTAGAAGAGTGGCGCTTTAGAGCCTGTCCTTGACCAGCTGCCAGACAAAGTACCTTAACAGACTTAAACATGACTAACCAAACAGCCTACGTTTAAAGTCAGTAAAAAAGCACGAAATGATGTGCGATCCGGCTAATGTACTGAATTTTCAATGGCCAGCAAATCCTAAGCAGATCTGAAATTGTTACTCTCAGTCGTCTGAGCCGTTTTTAATTCGATGTTGTACTAAAAGTTATCTTAACAACTCTGCCCTAAAGTTGGATGCTAATCTACGTTTCTGTATAATTCCCAGTGAGACTGCAGTCTGCTGGTTGCGAAAATAACTTACCGATTTTATTCAACTGTGTATAACCTCAGTGAAGCAAGTAATGAGTTGTACATTAAGTTACTGTTTATAGTCACGAAACCATTCCATTTAAATAAGTTTTCACAGTTTCCTGTTGTAGTTGTAACTATATTACAAAACAGTTGATGTGATTTGTCAGAATTTGAATAACGTGCAAGAGTGCATGAATGTCAAAAAATTCTCTAAATGTCGAGTTTGTTTTTCTGATGTATATTGTGAAGAAACATTTTATACGAGAAGCATGAATTAAGAAAATTCAGCACAAACAGAAGCTACGCTGTACTGTATATCACCGAGGGAACCGATCGCCGGTCGATTTAGTTCTCTAAGGCATGTTGTAATGATCTACTCTCCCAGGCTGTACATTGAATTTCCAAGTAAATAAAATGTGTTGGAAAGCTTG

Protein

Uniprot

Uniprot term	Description
O93367	T-cell leukemia homeobox protein 3 OS=Gallus gallus OX=9031 GN=TLX3 PE=2 SV=1
P26797	Homeobox protein ceh-19 OS=Caenorhabditis elegans OX=6239 GN=ceh-19 PE=2 SV=2
O93366	T-cell leukemia homeobox protein 1 OS=Gallus gallus OX=9031 GN=TLX1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050848	Family	Homeobox domain-containing transcription factors	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR000047	Conserved_site	Helix-turn-helix motif	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24333	HOMEO BOX HB9 LIKE A-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15607	TLX3, HOX11L2; T-cell leukemia homeobox protein 3	-	Transcription factors	ko03000	deepkoala