Genomic Location: Sc7jCM8_2954:532803...564390
NR annotation: XP_020621967.1, protocadherin Fat 4-like isoform X7 [Orbicella faveolata]
| CDS | ||||
| LOC110059583 | ||||
| Transcript |
| rna-XM_020766308.1 |
| Protein |
| XP_020621967.1 |
| Uniprot term | Description |
|---|---|
| Q9NRJ7 | Protocadherin beta-16 OS=Homo sapiens OX=9606 GN=PCDHB16 PE=1 SV=4 |
| Q8BIZ0 | Protocadherin-20 OS=Mus musculus OX=10090 GN=Pcdh20 PE=2 SV=3 |
| Q8N6Y1 | Protocadherin-20 OS=Homo sapiens OX=9606 GN=PCDH20 PE=1 SV=2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07645 | EGF_CA | Calcium-binding EGF domain | Domain | Interproscan |
| PF12661 | hEGF | Human growth factor-like EGF | Domain | Interproscan |
| PF19028 | TSP1_spondin | Spondin-like TSP1 domain | Domain | Interproscan |
| PF00028 | Cadherin | Cadherin domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002126 | Domain | Cadherin-like | Interproscan |
| IPR015919 | Homologous_superfamily | Cadherin-like superfamily | Interproscan |
| IPR000742 | Domain | EGF-like domain | Interproscan |
| IPR000152 | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR001881 | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR049883 | Domain | NOTCH1 EGF-like calcium-binding domain | Interproscan |
| IPR036383 | Homologous_superfamily | Thrombospondin type-1 (TSP1) repeat superfamily | Interproscan |
| IPR018097 | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR013032 | Conserved_site | EGF-like, conserved site | Interproscan |
| IPR044004 | Domain | Spondin-like TSP1 domain | Interproscan |
| IPR000884 | Repeat | Thrombospondin type-1 (TSP1) repeat | Interproscan |
| IPR050174 | Family | Protocadherin/Cadherin-related Cell Adhesion | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24028 | CADHERIN-87A | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding | Interproscan |
| GO:0007156 | Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
| GO:0005887 | Cellular Component | plasma membrane | Interproscan |
| GO:0007155 | Biological Process | cell adhesion | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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