Gene detail

Detailed information of XP_020621998.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_2954:1219792...1234535
NR annotation: XP_020621998.1, putative glutamate synthase [NADPH] [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020766339.1

CTTCTTGCATTGCTCCAGGAACCTGTTTAAGCTTGGTTAGAATCCTTGGCCAGTAGGAATGAAGGCTCTGCAGACGAAGTTAAGCGAAGTTTTCAGTTtccaaagaaactgtttagCTGCGTTTGCAATTGTAAGTGAAATCAGGGCGTTTTCAACTAGTACCAAGGCTTATACTTGTTTAGATTTCTTCCCACCGGTTGCGTCAACATCACCTGCAGTTTACTCTCTTAAATGGTCTTCCTAGTCTTCCTTCCTTTCATAGATCAAATCCTTTACTGTCTTCcccattttaacaaaaagtaaaaaaaaaaaaattcagtaggtgagaagttacaaatatttcgcCTTTTCTGCTCTCGTGCGATCGAAGTTTTTCTGGGATGTGAATGGGTAAGACTACTTTTTTATGCCTCAAGGAGCGACATCAGCCATGTCAGCTGCAAAACGTTGCCTAATAGACTTAGCGACCCCccatttctttttgctttttggcATAAGTTGATCTTTACctgcaatttttgaaaaaattctgaacgtgggaacattttgggccCGAAAGTCCTTAATTAAGGTTGCCTATTTATTATACTTTTGTTGTCGCTGTCTCGCTGACGTATTCGtcgttgctttgtttttttgtttttttgtcttacTCTATCATAACTCGTCACATCTATTCATTTATCCTGAATAAACCTTTATTATATTGGATTTTATTGTGTTGTacgggaaaaaagaaaagaaacgaagcCCGTGAATAACGCGACCGGGAGCAATGACAAGTACTTGAATTCGCAGTGTACAGCTCACCTGGGTGTATAGCAAGCTTAGGTACCtgaactgaaaaaaactttgttgagttatacccagtaaaacaaaatatggTTGGAACGGAGACGAAAAAGTAAATGACCCTCTGTAAGATGTAAGCATCTTTTGTTTGAAAGAGCAGATGGACTTTGAACGTACTGGTTATTTGCGTACATGTCGCAATTTGCGAAATGCCGGCACAAGGACGTTCTGTCCTACCTGAATTACCTGAATGGCGTCGGTCGCGCGTAATATCAAATACAGCAAATCAGCACGGAGTGCTTGCGtctgaactgaagaaaaaactgaaccactttgaatttttttctgcgGACACAAGCCCTCCACTGTGACATTTGCTCTGTACTTTATTCACAGGTGGCCCAAACACCTTGGCTGCCCTAAATGTCATTCAGTTGCGCGGAAACAGAAcgtaaataatttaaagtttgtATAGGAATGTAACGATCTGATATATGACACACACAGTTCGaaatatggaaaagaaattcaataaGAATGACTTGCTTCGACCATTCTGTATGCTACTTGTGTTTCGGTAGCGTTTTGGGGTTGTTTCAAAACAGTTCCAGGGAGTCAGTTTAGTTTCACCAGCTGTTTTCCTCGCGATATGTTATGTAAACAGACTACACTGACTAGAAACACAGAAGAGAAGCTTACTGAAATTCTTTTCCATATTTCGAACTTTTATAAATGATCCGCGTTACTCTGGTTACTTTCCTGCAAAACTCTTATATTTACGATGTTACGCAACCGGAGAAGCTTAGGATACCCGTGCTTTATATTCCCGACCCGATAATAAACCCGCGTAAAATAACGCGACAGTGGAAATTCACCGCGCGTGAGGGCACGACATGGAAATTTACTGACTTAAGCATTGCACAACATACTGTGGATGTTCATACAGAAGATTTTTGGAATTGTATATATCTATCTGGTTGCTTTTAGTTGAAATTTGTCTTTCCTCACTGTCCCAGCTCTTGGACCTCTCTGCGGAAAGAAATGTAAAGACACCGCCTTATTAAAGAAAACCGTGTTGATCATGGAAATTTACTGTAGGACCAGCCATAAATAACCTCGCATTTTTCTCCTGCATGCCTGCTTGACGAAACCTTGATAAGTGACCTCTCTGACTCTTTTGAGGAAAATGGTCGTTACGCAAACGCCTAATAGTTGCGAGGTCTTGCATGACCAAGACCAATATCAacgtgaaaatgaaattgagaaTACTTTGTTAATATATTGGCTAACTTGCAAAGgaaggccgccattttgaattataagAATGAAAATCTTTCCTTGGACGcttctttttcaagttcgtgTACGTCTTTATAATCGCTCGACATGATTCGTTGTGCATGCTAGGGGGTGCGAACCGGAAAATTACTTGGTTAGTATAATCGCGTGCAAACAGTCTTCCTTCACTGCACGTAAATGGTTTATACATAAATGGTTTATGAGTAAACAGTGTAGTTTGCATTACACCGCCCGTACTGAGAAATACAGGTAATTAAAACAAGCTTAGTTGGgtaaattaaacatttattcttacttttcagtttagtttttttagtGTTTACAAATCACCGGAAGTTAATTTGATTGGCTTGCTCTTCGTGAAAGAACACATGCGTGCAACTCACGTGTAGCGCCAAAGTCCGATCACTGCCTCCTAAACCAACAACAACCGTACACGCGACTTCTTCGTCTGGGCTAGATCGCAGGCAGAGCGTGTACAAGTGTGtacaattaattttatgtttttcgtCGAATTATAAGTTGTTATAGCACCAAAAGGAATAACTCTAAGAAAGAAATATGGTGCGGCCGAAACACGGCTATCCGCCGAAACAAGGGCTTTATTCGCCGGATTTTGAGAAAGAAGCATGTGGAGTTGGATTTGTGGCGAAAATCAATGGAGAGAAGAGCTTTCAGGTTTTGTCCGAAGCACTTACAGTGTTGGAGAGAATGAAACACAGAGGAGCTGTTGGATGCGAGGAGAACTGTGGAGATGGTGCTGGAGTTATGACGGGAATTCCACATGCCTTCTATGAACGAGTTATAGAGGAAGGTAAACTGGGATTCACTTTGCCATCAGCTGGTGATTATGCAACTGGAATATTCTTTATTGACACTGACGCAAACAAGGCCAAAGTATGTGAAGACATGTTTGCAGGACTTGCAAAAGAATGCCAAATTGAGgttCTAGGTTGGAGGGATGTACCATTTGATAACAGCATGATTGGAAAAACTGCTGTGGAAAGTCAGCCACTAATGAGACAGGTGTTTGTGACAAGCTCACTGGACCAGGAAACTTTCAAGAAGCAGGTTTATCTCTTGAGAAAAATGGCATCAAATAGGATTGGTACAAAAAATCGACGATTTTACATCTGCAGCTTATCCTGTGACACAATTGTCTATAAGGGAATGTTGAAACCAACACAGCTTAAAGGTTTTTTTCCTGATCTACACTCTGAGGATTACTGGACCCACTTTGCCTTGGTTCATGGTAGATTTTCAACAAACACATTTCCAAGTTGGGAGAGAGCTCATCCAAACAGATATCTAGCCCACAATGGAGAGATCAACACGATAAGAGGGAACATTAACAACATGAACACAAGAGAGGGAACCATGTTCAGCAAGTACTATGGCAGCAACACACAAAACCTGTTTCCAGTTATAGAAGCAGACCTGTCAGACTCTGGTTGCGTTGATAATGTGCTTGAACTTCTTGTCATGGCAGGAGGCCGCTCACTTCCAGAGGCCATAATGACAATGGTGCCAGAAGCTTGGCAAGGGAACAGTCTGATGAGTatggaaaaacaacatttttatcgCTGGATCTCCTGTACAATGGAGGCGTGGGATGGTCCTGCCTTGTTCACATTCTCTGATGGGCGGTATATTGNTAAAGTTACAGgtattgaacacaataaaacaaagaaaagaaccaGGATATTTAACAGTTAA

Protein

Uniprot

Uniprot term	Description
Q0DG35	Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0555600 PE=2 SV=2
Q9C102	Glutamate synthase [NADH] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=glt1 PE=1 SV=1
Q9LV03	Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLT1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00310	GATase_2	Glutamine amidotransferases class-II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050711	Family	Electron transfer and nitrogen metabolism enzyme	Interproscan
IPR017932	Domain	Glutamine amidotransferase type 2 domain	Interproscan
IPR029055	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11938	FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006537	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930	Molecular Function	glutamate synthase activity	Interproscan
GO:0016040	Molecular Function	glutamate synthase (NADH) activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0019676	Biological Process	ammonia assimilation cycle	Interproscan