Gene detail

Detailed information of XP_020622187.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_3006:709755...722229
NR annotation: XP_020622187.1, bifunctional polynucleotide phosphatase/kinase-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020766528.1

GGGGNGGAGGGGTACTACGAACGTGTATTTTTGTAGAGTACGAGTAATCCCTCTTTCGATTAGTCCGTCGCGCGCGACACGAAAGAATAGAAAACAACGAGAAGAAAATGGctgcgtgaaatcctgggggcgaggagcacAAAACACAGAAcatttgataaatttaaatctttccaaagcctgttggcagattCGCAAGAACATCACGGCTTGCGAACCCTGCGAACCCTTGCGAAGCGCAATTCCAACGTTTCGATTTGCTCCGGTTGCAAAGCTGTCTATTGTCAGAAAGCGAGATAAACGTTAACACTCCCGCAAGACGACACACGTATCACGAATGTTGACAACGTTCCTAACATaaaccaatcatatttttgcgttgtgagagctcctttcgcgcgctcctcgcccccaggattttacgcggccatttttttctcgcggttttctttcgcgtcacgcacggcGGACTAAACCAAAGAGGGATTACTCCAGCCTCCAGAAGCATTTCCCGTCCAAAATACTCAATTTGGCGGCTCAGGCGCGCAAATTCTGTTTTTCAACGCTAGCGTACCCTACATATCGAAGTGTGGGTTTTTTGTTAGGGATGTATAATGGAGTGTGTAGCAATTTGTTGCCAGAAAAGTCACGATCCAGTTCCTCTTCCAGACGGGAAGAGTGTCTCTCTTGGAAGAGGACCTCTCACCAAGATCACCGACAAGAAATGTTCTAGAAATCAAGTTCAGCTTACTGCAAATTATCTGGAAAAGGAAGTACAAGTTACTCAGctAGGAAATACTTCAAGCTGTGTTGGAGGTGTAAATCTGAACAAAGGGGACTCAGCATCCCTTGGACCTGGAGGAATGTTTTGTCTCCTTGGAGACAGCTATCGTTATTTTATTCACTTCACTTCAACATCTTTTGAAAAAGATGATCCTGATGAAGAACCAAGAGCAAAGAAAGCTCGTTGTGATACCTTAAGTGACTCAGATGATGACAATCTATCGCAAGAAGACCTGGAGGATATACGCCGAGAATTTGGCCAAGAGATGGTTGAAAAAATACAGCAGAATCAAAAACAAGATCAAGAGGTTTCCAAGCAGGAAAGTTCTCTTGCTTTTGAAGATTGTTGGGAAAATATAGAAGGAAAGCttattatttttacaagtaAAGGAATAGAGGGAAGATCAAAGATTGCAGGTTTTGATCTTGACAGAACTCTTATTACCACACAGTCTGGGAAGGTGTTTTCTTCATCAATAACAGATTGGAGGTGAGCAAGATTCCTCTTTAACAATCTTACAATGGTCTAGGATAATAATGCGTAAGACCTGCACTGTATATTGTACAGATTGCTTGTTAAGTACTTAATTTCCTGGTTTATTTTTCTGGACACCTGTGCACAGCCCTTATTGCATAGAGAGTCTGCATTCCCTGTTGATGTTGCTCTAACCAGACCCTAATTGCTGTAGTCCTGTTCAGCTTATCTCCTCACAAATTACTTCCCTAAAGATATCACAAATTCTAGTGCTTTGTTAATGCTGCCTCatcatcaggcttttagccaggatttgaaaagtgaccgtccaaaatgtgctatataGGGCGTGCTCAACTAAACAATTTATTGGGCaacacatgaaaaataaaaggattttctttaataagtggctgtccacaggaCGTCTGCATGCCCATCTTGCTAAAAGCCTGCTCTTCAGGCAATGTACCTGCCGAGTTTCACGCATTTATGATTAGGCGTGAGTCTCACAACTGCAGGTCAAAAATGTTGATCCTGTGTATTCCTGCCTACAAACCAAAGTCTCATGCAGAGTTGAAACATTAAGCTGTTACTGCCTTAACCGACTCTAAATATGTAAACTCAAACCAATGGAATAAAAGAAAAGtgtgtattaaaaaaaaagtgtgtatTAAGTACAATGGTACAATGAAGGTGagaaaaataccaaatactTTCTCAATCTGGAAAAGAGACATTGTAAACAAGGAACAATAACCCAGCTCAAAGTCAATGACA

Protein

Uniprot

Uniprot term	Description
Q96T60	Bifunctional polynucleotide phosphatase/kinase OS=Homo sapiens OX=9606 GN=PNKP PE=1 SV=1
Q9JLV6	Bifunctional polynucleotide phosphatase/kinase OS=Mus musculus OX=10090 GN=Pnkp PE=1 SV=2
P61799	Aprataxin OS=Danio rerio OX=7955 GN=aptx PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08645	PNK3P	Polynucleotide kinase 3 phosphatase	Family	Interproscan
PF17913	FHA_2	FHA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR013954	Family	Polynucleotide kinase 3 phosphatase	Interproscan
IPR041388	Domain	PNK, FHA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12083	BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0046403	Molecular Function	polynucleotide 3'-phosphatase activity	Interproscan
GO:0046404	Molecular Function	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	Interproscan
GO:0046939	Biological Process	obsolete nucleotide phosphorylation	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan