Gene detail

Detailed information of XP_020622300.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_3012:1525325...1541019
NR annotation: XP_020622300.1, 5'-AMP-activated protein kinase subunit beta-2-like [Orbicella faveolata]
Species abbreviation OFAVE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_020766641.1

TTCTATCCCATCATCGCGTGCGGGAACAGGGGCTAAAAATAATTTCGTGTTTTGTGATGGTTTCGTGCTCAAGGAAAGTCACAGCTTGACGATTATGATAGAGGTGCTGtgagtaaacaaacaaacaatgggAAATACAGGACTAGGGAAGCATAAAGATGTGCACAACTCAGATTCTACTTTAGAATTTGAAACTGGCAAGAAAATGTTCCCCAGTGAGCAAGAAGCTAAGATGATTTTATCAGCAAGGGAACCAGAAATTGATGATCATAGTGATTATGACTATGATGATGACTCTATGGAAGGGGAGCCACCACAAAAAAGAACAGTACCAACAGTGTTTACCTGGGAGAATGGTGGCAGAGAAGTCTTACTTTCTGGGAGTTTTAATGACTGGAAAACAAGAATCCCTATGAACCTAAGCCAAGGGGAATTCTCAACAATAATTGAGCTGCCTGAAGGCGAGCATGAGTACAAGTTTTGTGTTGATGGCCGCTGGATTCATGACCCAAATGCTCCAACCACAAACGACAATTTTGGGGGCAGAAACAATGTCATTAATGTAAAGAAGTCTGACTTTGAAGTGTTTCAAGCTCTGGAGTCTGATGCTACTGCCAGTATTGGTTCTGCTGGCTCGATCAGTAAGTATCCAACCACAAACGACAATTTTGGGGGCAGAAACAATGTCATTAATGTAAAGAAGTCTGACTTTGAAGTGTTTCAAGCTCTGGAGTCTGATGCTACTGCCAGTATTGGTTCTGCTGGCTCGATCAAATCGATGTCGGGATCACCACCTGGCTCCTATGGGCAGCTCATTCCATCACACCACAACCCTGTTATTGTGCAAGATGGCATGCATGCCAGTGTCCCTCCAGTTCTACCACCACATCTACTTCATGTCATACTCAATAAAGATGTTGTGGATCACAATGACCCATCCCTTCTGCCAGAACCAAACCACGTTTCTCTCAATCACCTCTATGCACTCTCAATAAAGGATGGAGTTATGACATTAAGTGGGACACATCGCTTTAGGGAGAAATATGTCTCAACGCTGCTATACAAACcaatcaaataaaaacattttgctTTATGTAAAAAGCTGTCTTAATGCAGTGTAGCATGATCGATCAAGGTGGTTGGATTGTCTTCATGGATCAGATGAGTTGAAGGACTTACGGCAGGAATTCGGCAGAAAAGTTATTTGACATTGGCGAGGAAAGTAAATATGCACTGTTTGAAAATGCCTGGTTTGCAATCCCAGGTTTGAGTTGAGTAGTTCGTTGTCTAGGGATTGTGTAAATCACATAAGAACTACAGTATTTGTTGTTACATTATTGAGGAATGAggggaaaattcaaatttacagCCTACATACATGTGCATCCAGGCAGTCTTCAGCTAATACTGGGAGACCTCCAAGCTAGTTGCTTTTTACAAAAATGTGGAAGCAACAACAAGtcgctttttgaaaaaaatagattttcaaCTCTATTTTCAGCCATAGTTGTGGCAACATACTGTTGTATAAGgtgattttttaaatattatcaTTAAATAATGTAGACCTTGTTCCTCGAGTCTTTGTTCCTTACTGtgcaaacatgacaaaacatcTGGCTCTCAAATATTGTTACTGGCTAGctcgattttgattgatttcaaaaacaatagaaatgagcaGAAGTAGAACACTGGGGACTTGAGCCATTCAGCTGCGGGTGTGTCACCTACGCATGCCGAATTCCACCAGAAGTCTGATATCTTCAGCCAGGTTGCTCGTCTGCATactgctggtcaaggggaacaaagACTCTGAGAGAGTAAAAAGTTGACAGTGTTTTCATATTGAACTTGGTTATCGCAGGTTAAATAATGATGTACTCATGACTGAAAAATCACGATATTAATAGCTAAATAAATGCTAATAACAAGAAGCAATGTCAACAAAAGGCAGCAATATTGTAGATCATACTTTGAATTGTTGTTCCTACATGAATTCTCCAACAAAATGGCACCACAATATTATGTCAGGGCGTCATGATACAGATTTGAATTTAAGAACATAAACtatgtttattttgtatttagaGCACCTGTGCTCAGGACCAATAATTATCAGAAGATACCTTGATCTACGCTTCTAGAAGATAACTTACACAGTCTCTAAACTTGTTCGTATTGTGTCGCTgatttaacttttttgttcttacttgCATTATGCCTGCAATGCAATTAGtcgcaattgtggtaaaaacatTACTGGCACAGCCTTCTGGTGTTGGTAGGCATTTTTGAGAGCTATTTGTACCTAGTGGCAACAGTAGCTCTCACTAGGACTGTTTTTACAGAGGGTTAGCCATAATAAAGTCTTGTTGTCCAAAGGACAACCACCAAAACAGCGGGAattgcatacatgtaataatattgtaacaccatatttttttcttttttacttggcACTAGAATTACTTTGAATAATACGTTTTATTACACTAACCACTACAAtactttaataattattatagtctTATTATCCCTAGAACTCTCTGCAACACATCCTGTTGCCACCATTAAACCAATGGTCTTTGAGCAGAGATCATAGACCACCCCAGACACAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PAM0	5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus OX=10090 GN=Prkab2 PE=1 SV=1
Q9QZH4	5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Prkab2 PE=1 SV=1
O43741	5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens OX=9606 GN=PRKAB2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005394 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04739 all species →	AMPKBI	5'-AMP-activated protein kinase beta subunit, interaction domain	Family	Interproscan
PF16561 all species →	AMPK1_CBM	Glycogen recognition site of AMP-activated protein kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR006828 all species →	Domain	Association with the SNF1 complex (ASC) domain	Interproscan
IPR037256 all species →	Homologous_superfamily	ASC domain superfamily	Interproscan
IPR032640 all species →	Domain	AMP-activated protein kinase, glycogen-binding domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR050827 all species →	Family	CRP1/MDG1 DNA-binding & kinase subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10343 all species →	5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0031588 all species →	Cellular Component	nucleotide-activated protein kinase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07199	PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit	-	Insulin resistance	ko04931	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.