Gene detail

Detailed information of XP_020622592.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_1227:1198826...1206380
NR annotation: XP_020622592.1, bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_020766933.1

aaatacaagtgacaagtggaatATTCCAGACtgactattttataccatgccataggtGGGAAGGCGGGAGTAAAACCGTCGACTATAGAACGGCTTTCCTGTGTTCTGATTGGCAAGAGATTTTTGGCTGTATTTTATATGGCATGATATAAAGCAGTGTATACCtcaattgttaattttcttgaaGTCAGTGCAATGTCCTACATGTCTTGAGGTTGACGATCTTAGGAAACCCGTGGCCGGAAAGAAACATATCTACAAAtcaactgtttatttttcttttttcaggttgGCGTAAGTTTCTCAGCGATATCAGTTCGCTACTTGAATTGAATTTCGTATTATAGATAGTTGTAGGCGTTAGTGTTTCATCCAACTCcgcattcatttgttttctgagCTGTCTGCTgtatcaataattatttagtttttcgGGAAATTCCAGGCTAAAGGACGCAGCAGTTAGTACGAAATAAACACTAATGCCTCAAGTAGGCTAACAatcattttttatcttttcattttaaGCAGACAAAATCTGTCTTATAAAACGGTCAGTGGAAATTAAATTCCCCAAGCAGAAGCTACTTACGAcctatgaaaagaaaagtggCGAATTTCAGGGATTTAGACGGTCAAGTGATGTCATTTATTTTCCAACCGGAGCTCTTTCAGGGGAATACAActttaactttttgttttcgttttatttcGACTCTTCGAATCAGAAACACAATGAATAGCCAAAATTTTCCGAAAGTTCTCGGCCTGGAAAATTTAAACACTATCCACATTTTTCGCATCTATTAAAGACACACATGTTGGTTTCACGGATATCACATGATCAgaatatcttttttaaaattatgatgATGTCAGATACATAGGGCAATACGTGTCACAAGCCGTAATGATCTCGGCTTTTATTTACATTATGAAATGATCATGATTACCATAGAAGTCAACTGaatctttgaatttttaaaatgatgcTTGAAAACCTAGTTGTGCGTATGACTTTCGTCGCagaactgttctttttttctcgatTATGCGATAGCGCTGTGGACCCAAGAAACATAATCACGATCAGCCAACCACAGAGAGGCGCTGTTTGGATATCGGGACATAACTCTTATCCAATTGCATGGACTCAGTCGAAGTTTTGCTTCAAATGGAACATAGAACTACTGGACAGTGAGGAGAACAAAGTGGTAGAGATTTCATCAGGTTTAAGCGAGTTTAAAGATGATATAATGAAGCATTCTTGGCTTGTTCCACAGACCATTCAATCGGGCAGTTATCATATTAAAATTTGCGAAAACAGTGCTCCAGAAACTTGTGGCGACAGCGGTTCATTCACTATCAGGAATGGCAACGAGCCCGTTTCTGTTGACGAGGATGATTCCGAAGCGTTCTCTCCAGTGCAGTCTACTCAAATGCCAGGACAGTTTGCTCCTAATAATGTAACGAGCCAAAAGAAGACCGCTGATCTCCACGAGTTACCTCATGAGCTGCGTCGGCAAAAGCGTGTGGAACGAGAACAGCTGTACTTCAAACGCATGACTGAGCAGATCAACCAACAGGAGAACGGGGAATGTACGATTGATCGTGTCCATCGGCCTTCAGGAAAGACCTTTTTGGAGCGTTACATGAAGCCGCGTAAACCTGCTATTTTAACGGGAATGATGGACAGCTGGGAAGCCACAAAGTCCTGGGACTTTGATCAACTTGGAAGTATCCTCACTAAAGGTGTCAAAGTTGACGTCATGGAAGGTATCACTCCCTATTCCCAATGGAATAAATTTCGCAGTCGGTTTTCTGATATTTACAGAGAGCCAGCAAAAGTGATCATGAAGGACTTTCATCTAATTTACCCCGAGCTGATGGACTCAATGAGTTTTCCGGAATTCTCTCAAGACTACCTGGAGGTCGTAGAAGAAGACATTCGTCCTTCCCAGCTGTCTTTTGAGATGACTCCCAAGAGATCCGGATTTCACTGGCGCGTGGAGGCGCTGAACGCGTCTTTGTGGAGCGCTTTGATTCATGGACGGAGACGCTGGGGTCTTTATCCTCCTTATCATTACTTTATACCGGGTGCAGCGCACAACAATCATCGGACCCAGGACTCTCACCAATCGGAGCCATTTATATGGTGGATTTACACCAGACCTGAGTTACAAGACGATTACAAACCGCTGGAATGTGTACAGGAACCGGGGGAGTTGCTTTACATTCCCTCGGGGTGGTGGTGGAGCAATGTCAACATTGATGACTCGGTTGCGATGCAGaaatcAACCTGTGATGAGACAAATATCCGAATATGCATGGATGAGTTAAAAGAATTAGCTGACAGTGCCGGGGACAACTTTCATGCTGACGTATTTATTCAACTACGTCATTATCTGGCCAAACGGGATCCAGGGGTCCTTACGGATGATGACCAGCTGTTCAAGTCTCCCATTAGAGATCTGGGGAAAACTAACACTGAGTACAGAGATCGTTTTCATGAAGACGTGTGGAAGaAATATTTCGAAGATGTGATGGAGGATGAGGATTCCTGATAAACAAACGCATTGGCGTCCCATGAAGATGtttatataaaaaattaaagatgGAATGCTGTGCTCGCGGTTCTTGCACATGATTTATGACAGAGCCACTCAAGGTTATCATGAATGCCTATGAAATATAGGAACTAGAAGTAAGCTGTTTTGAGAGTTCAGTATTAAGCTTTAATTTAAATGTGTAATTTTCCTAAGACGCTCCTCGCTAAATTATGTCAcagattttgtttaaaataaataaagaacaaGTACTCTGggtgaatttaattttgctacaaaACAGTTATCGATAACAATGGTTTTTGACTGACGTTAATAATCTTGATTTGCATTCAATGATAACGAGCACACTTTAAAGTTTATGGAACATACGTAGCAGGCCTTT

Protein

Uniprot

Uniprot term	Description
Q7ZX37	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-B OS=Xenopus laevis OX=8355 GN=jmjd6-b PE=2 SV=1
Q6GND3	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-A OS=Xenopus laevis OX=8355 GN=jmjd6-a PE=2 SV=1
Q67ZB6	Arginine-specific demethylase JMJ20 OS=Arabidopsis thaliana OX=3702 GN=JMJ20 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13621	Cupin_8	Cupin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003347	Domain	JmjC domain	Interproscan
IPR050910	Family	JMJD6 family arginine demethylases/lysyl-hydroxylases	Interproscan
IPR041667	Domain	Cupin-like domain 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12480	ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006909	Biological Process	phagocytosis	Interproscan
GO:0033749	Molecular Function	histone H4R3 demethylase activity	Interproscan
GO:0106140	Molecular Function	P-TEFb complex binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19375	HSPBAP1; HSPB1-associated protein 1	-	Chaperones and folding catalysts	ko03110	deepkoala