Gene detail

Detailed information of XP_020623548.1 in Orbicella faveolata

Genomic Location: Sc7jCM8_3154:3050215...3062405
NR annotation: XP_020623548.1, probable lysosomal cobalamin transporter [Orbicella faveolata]
Species abbreviation OFAVE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_020767889.1

TTCAAGTGGTttctgtttcgttttgtttttgtgcaaGAGTTGAGGTCTAAGGAATTGAACACGCGGAATACGTCGTAGGGTTCTTtgatattaatttaattaaatcattcTGAAAGAATAAGGGATGGCCATCCCTCAGGAGGTGTTAGCATATGGTTGGATACCATTTACAGTCGTTGTGGTGttaacatttattttttcatggttCTACATCCGTTTTTATCAAGATCATGCGCAGTCTGAAGTGTCGTCCACACTAACTGGTATTCTGGCCCTGGCTATCACATTGCTTACTATTGCTCTTGTTCCTGTGGACATCTTCTTAGTTTCATACATGAAAAATTCAGATGGAACTTGGAAGGATTGGAGCACAAATGGGACTATGAGAGATGAATTTGAGCAGACAATTGCTGTAGGATATTATGtgctGTACTCGTTGGTGGCATTCTTTGCATTCATACTCATGCCATTCATGTACTTCTACTATGAAGAAAAAGATGAGGATGCCACAACAAGACAGAGGATGTGTGGTGCCTTGAAGTACACCATTGGGTTTTTGATAGTTGCCattgttcttcttcttgttgGAGCCTTTGCACCATTGAAAAAGCCTCCAAAGAATATAACCCAATGGGAGAAGAAAATTAGCTTCTTAAAAGATGAATTGCAGGCTCATAATGGTGAAACTGCCCTGTCACtgctcatgggtttcctttccTTCATTGGCATGGTTATCATGATCACCTACACAGCTTATGGGATGACGTCCTTACCCTTCTCCATGCTGAAAGGGTTTAAGAACTCAAAGAAAGAACATCTGGAGGTCAGCCATGAACGTGAATCAGTTGAAGAGCGTGCACGCATGATCCGAGCCAAGTACATGGATGGGCATCCAATGACTGGCCGTGATCGAAGAACGCTTGCACGCCTTGAGGGAGAGGAAAAACTCCTCATTAGAAGGGAGAGACATTTACAGGCTGCAAACCTTGGCTGGCTTAACAAATGCCTCAAGTGCTGTCGTCCATTTGAAGTTGTATTtggtgttttgttcttgttactTGGATTGCTCATCATCGTCTCACTCTTTCTTACTTGCTTGGACAAGGCTCTGAATTCACTGGGGTACAAGTATGGTTATGTACTTACCAAACCTCAGCTGCCTAACCCTATCAACATTGTCATGGTCTATGCACAGAAGgtttttccaCTGGACTATTGCTTGTTTGTGGCCATTGTTCTCTACTTCCTTTACTGTACCATGTCTGGGATCAGAGCAATTAGCATACGCTGCTGCTGGATTAGACTGTACAAAATACGTTCCCGCAAGACTATGCCGCAAGCTCTGCTGTTTCTCGTTCTGATGTTGATGTTGACTATGCTCTTCTTAAACATTATGTTGTTTACACTGGCTCCTCAGTACGTCATGTATGGCAGCCAGCATTACAGAAACACAACATCTACTGCAGGTCACAGCAGTAACACAACAGTTCATACTAATGGCACTGCGCCTGGAAATAGCACTGTGACTActacatttgaaacaaaagtcTGCTCCACTGCTGCCCCTGAAGgtGCATGCATCATGACTCGAGCTGCCATGTTACTCAACAGATTTTTCTACAAAGTTTGGTTTTTTGGTGCCTGCTATTACTGGGGAACATGGCTCTTCCTGGCAatATACATTATTGGCCTGGGGGTGTCGATAGCAAAAAAACGCAAGTCCGTGGTGGATGAGGAGCTGGACTCTAGTGATGACTCAGATGAGGAATTGGTTAATGCTTAAATATCAGTTTAATTTGTACTTTAGTGCAAGTACATCTTGACAGAGCTGTGTTTTAATCACATCTCACAagtaaaacaaccaaaatgcATTCCAATTTCAAGATATTTGGTCAGGTAGCAAAAGAACGTGTTGCAAACAACTTGTAGATAGGCATGTATATAtgccaagggtatcttttgcaAAACTAAATGAGCAGCAGTAAATTTTAGTTTCACAAGgttaaattgcttttgttttaatgtGATTGTGAAGTGAAAGATAAGATTAATCATATCAAAATAACCTTTAACTTAGTTTGCAAAAATCATTCCAAGTGTGAGAAATACTGAAGGTCACTTGAATCGTCTTTGTAGCACCTATCTGTGGTGGGAATTAggaatttcagttgttttgccCAATTATTGACAGAAATACATTTAGAAATAGAATTGTTTGATGATTACAAGTAAATGctaatttgaaatcaaaacaaagcaatctATGAAAGTTTGTACATGCAAAAAAGGTATTAGATTGCCTTTTTTTGTTCAAGGAGATATACGTTATGTGCTGTtagatatttattatttaaacaaatacttaaaaataaatgtttgtaaaaACGTTAATTTACATTAGACCTAGATGCAACAACAAAATGCATTATAAAGTAGATTGTAATATTCTGTACAGCAAATTTGTAAGAGCACTGATATAGttgttacaaaaataaaataattcagtgTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RM45	Probable lysosomal cobalamin transporter OS=Nematostella vectensis OX=45351 GN=v1g160387 PE=3 SV=1
Q5ZI05	Lysosomal cobalamin transport escort protein LMBD1 OS=Gallus gallus OX=9031 GN=LMBRD1 PE=2 SV=1
Q5PR61	Lysosomal cobalamin transport escort protein LMBD1 OS=Danio rerio OX=7955 GN=lmbrd1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005658 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04791 all species →	LMBR1	LMBR1-like membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050854 all species →	Family	Lysosomal Cobalamin Transport Escort Protein LMBD1	Interproscan
IPR006876 all species →	Family	LMBR1-like membrane protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16130 all species →	LYSOSOMAL COBALAMIN TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0072665 all species →	Biological Process	protein localization to vacuole	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14617	LMBRD1; LMBR1 domain-containing protein 1	-	Cobalamin transport and metabolism	ko04980	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.